查看完整 summary.json 原文
{
"code": "SASDX49",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/nm",
"project": {
"title": "Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy.",
"publication": {
"title": "Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy.",
"author_list": "Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M",
"journal": "Nat Commun",
"doi": "10.1038/s41467-025-65502-8",
"pmid": "41309593",
"published_date": "2025 Nov 27"
},
"status": "released",
"submitted_date": "2025-09-15",
"released_date": "2025-10-26"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDX49.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDX49.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDX49_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDX49_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDX49_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDX49_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDX49.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus3 2M",
"resolution": 0.172
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "point",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Group IIC Intron Domain 1, 2 & 3",
"short_name": "D1-3",
"sequence": "GGGUUAUGUGUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGCAAGGGUGUCCGUGGCGACAUGGAAUCUGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAUGAGGCUAGGUAUCAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAAAGUUGGUACAGAGUAAAUGAAGCAGAUUGAUGAAGGGAAAGACUGCAUUCUUACCCGGGGAGGUCUGGAAACAGAAGUCAGCAGAAGUCAUAGUACCCUGUUCGCAGGGGAAGGACGGAA",
"organism": "Oceanobacillus iheyensis",
"uniprot_code": null,
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "RNA",
"uniprot_sequence": "",
"mw": 103.0,
"total_mw": 103.0,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
"name": "10 mM MgCl2, 5 mM Na-MES",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 6.5,
"deuteration": null
},
"purity_method": null,
"name": "Group IIC intron Domain 1, 2 & 3",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "Uppsala University",
"webpage": null
}
],
"contributor_name": "Shekhar",
"contributor_surname": "Jadhav",
"orcid": "https://orcid.org/0009-0009-4682-7568"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2021-09-02",
"storage_temperature": 25.0,
"cell_temperature": 25.0,
"exposure_time": 2.0,
"number_of_frames": 1700,
"wavelength": 0.9918,
"sample_detector_distance": 2.827,
"concentration_min": null,
"concentration_max": 1.13,
"sample_volume": 95.0,
"flow_rate": 0.5,
"s_min": 0.137,
"s_max": 5.205,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDX49_fit1_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "dammif (r13469)",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDX49_fit1_model1.pdb",
"model_mw": null,
"bead_radius": 2.0,
"log": null,
"symmetry": null,
"comment": null,
"user": 1274
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDX49_fit1_fixed_fit_img.png",
"software": "DAMMIF",
"chi_square_value": 0.96,
"p_value": 0.7952,
"fit_residual_plot": "SASDX49_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDX49_fit1.fir",
"fit_log": null,
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "1/cm",
"experimental_mw": 92.3,
"experimental_mw_error": null,
"guinier_i0_mw": 92.3,
"guinier_i0_mw_error": null,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": 21.66,
"pddf_i0_error": null,
"guinier_i0": 21.4185,
"guinier_i0_error": null,
"pddf_rg": 3.675,
"pddf_rg_error": null,
"guinier_rg": 3.59,
"guinier_rg_error": 0.04,
"pddf_dmax": 12.04,
"pddf_dmax_error": null,
"porod_volume": 195.2,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 5,
"guinier_point_last": 44,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDX49_datloglog_img.png",
"symmetry": null,
"last_modified": "2025-11-28T16:19:39.330229+01:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
{
"code": "SASDX49",
"status": "success",
"started_at": "2026-08-11T16:38:37.080081+00:00",
"finished_at": "2026-08-11T16:38:44.564586+00:00",
"source_last_modified": "2025-11-28T16:19:39.330229+01:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDX49/",
"path": "/data/saxsdb/sasbdb/entries/49/sasdx49/source/summary.json",
"size": 6533,
"sha256": "defa488a49e539d479c078c7f564b8e0d1f8113ff36d76bbb174f44443e4f3ef"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDX49.dat",
"path": "/data/saxsdb/sasbdb/entries/49/sasdx49/source/SASDX49.dat",
"size": 46928,
"sha256": "90a59f6eb6f4ba793c01612c3727767b964c200787d6a5f30b8bca3d2f0010c8",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDX49.out",
"path": "/data/saxsdb/sasbdb/entries/49/sasdx49/source/SASDX49.out",
"size": 41560,
"sha256": "d9886cf0b4edd694b3d9dc97fa21495eeb4e15538595de0a022776d6509ae3f8",
"role": "pddf"
},
{
"status": "not_available",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDX49.sascif",
"path": "/data/saxsdb/sasbdb/entries/49/sasdx49/source/SASDX49.sascif",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDX49.zip",
"path": "/data/saxsdb/sasbdb/entries/49/sasdx49/source/SASDX49.zip",
"size": 75092,
"sha256": "fe40fe242723e164f90b3c2c4b385c6233fe31186ae5718343c818a366823664",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}