SASDXB3

Apical stem loop of stem loop 2 motif in Delta variant of SARS-CoV-2 (s2m Delta_short)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2025-07-21T18:28:38.186112+02:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Apical stem loop of stem loop 2 motif in Delta variant of SARS-CoV-2 (s2m Delta_short)

浓度— – 2.5 缓冲液 / pH50 mM Bis-Tris, 25 mM NaCl / 6.4
实验温度25.0 设备 / 束线PETRA III / EMBL P12
波长0.12398 nm曝光0.095 s × 33

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
apical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2
查看序列
>S2MDELTA_SHORT25BPGGCACUCGGAGUACGAUCGAGUGCC
RNASARS-Coronavirus-2 Delta——–—monomer分子数 18.132 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
12617[3]0.0223001–7.31442 1/nm含误差列缺失 00sasbdb/entries/b3/sasdxb3/source/SASDXB3.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
i0Guinier0.0418526—arbitrary
mwExperimental7.3—kDa
rgGuinier1.390.01nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50 mM Bis-Tris, 25 mM NaCl缓冲液浓度—
pH6.4添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2022-11-30储存 / 测量温度25.0 / 25.0
曝光时间0.095帧数33
波长0.12398样品-探测器距离3.0
光源X-ray synchrotron探测器Pilatus 6M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q 范围0.022 – 7.314样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/b3/sasdxb3/source/SASDXB3.datdownloaded1198967a06885fdc82d8b8d78122f82e7312e706563fa525888ccac88763abcb98cdd0下载查看原文件源站
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pddfsasbdb/entries/b3/sasdxb3/source/SASDXB3.outnot_listed——下载查看原文件
sascifsasbdb/entries/b3/sasdxb3/source/SASDXB3.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/b3/sasdxb3/source/summary.jsondownloaded551146c07d561066a3c51ca732c6278dd644e97545c72a1a0ea0cfa64b60c9dba26a下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(1 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDXB3
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleStructural heterogeneity and dynamics in the apical stem loop of s2m from SARS-CoV-2 Delta by an integrative NMR spectroscopy and MD simulation approach.
project.publication.titleStructural heterogeneity and dynamics in the apical stem loop of s2m from SARS-CoV-2 Delta by an integrative NMR spectroscopy and MD simulation approach.
project.publication.author_listWirtz Martin MA, Makowski JA, Matzel T, Kensinger AH, Herr A, Richter C, Jonker HRA, Wacker A, Evanseck JD, Schwalbe H
project.publication.journalNucleic Acids Res
project.publication.doi10.1093/nar/gkaf552
project.publication.pmid40586311
project.publication.published_date2025 Jun 20
project.statusreleased
project.submitted_date2024-06-04
project.released_date2025-07-21
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experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
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experiment.sample.molecule[0].long_nameapical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2
experiment.sample.molecule[0].short_names2m Delta_short
experiment.sample.molecule[0].sequence>s2m Delta_short 25 bp GGCACUCGGAGUACGAUCGAGUGCC
experiment.sample.molecule[0].organismSARS-Coronavirus-2 Delta
experiment.sample.molecule[0].uniprot_codenull
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experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeRNA
experiment.sample.molecule[0].uniprot_sequence
experiment.sample.molecule[0].mw8.132
experiment.sample.molecule[0].total_mw8.132
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experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptions2m Delta_short RNA with two GC additional base pairs at the beginning of the stem (G-2, G-1, C+1, C+2)
experiment.sample.buffer.name50 mM Bis-Tris, 25 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
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experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameMaria
experiment.contributor[0].contributor_surnameWirtz
experiment.contributor[0].orcidhttps://orcid.org/0000-0002-0318-7785
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experiment.concentration_unitnull
experiment.date2022-11-30
experiment.storage_temperature25.0
experiment.cell_temperature25.0
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pddf_rg_errornull
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porod_volume_errornull
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pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDXB3_datloglog_img.png
symmetrynull
last_modified2025-07-21T18:28:38.186112+02:00
bragg_peak[]
manifest.json:31 个字段值
字段路径原始值
codeSASDXB3
statussuccess
started_at2026-08-11T13:57:04.046945+00:00
finished_at2026-08-11T13:57:10.898509+00:00
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查看完整 summary.json 原文
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  "status": "Published",
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查看完整 manifest.json 原文
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