SASDXE3

Dengue Virus 2 (DENV2) complex 5'-3'

数据类型:SASBDB 实验数据 状态:Published 曲线类型:SEC-SAS 最后更新:2025-09-09T12:06:58.527283+02:00

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Dengue Virus 2 (DENV2) complex 5'-3'

浓度— – 0.7 缓冲液 / pH10 mM Bis-Tris, 100 mM NaCl, 5 mM MgCl2, 15 mM KCl, 5% glycerol / 6.0
Experimental temperature25.0 设备 / 束线Diamond Light Source / B21
波长0.094 nm曝光3.0 s × 600

分子组分

组分类型 / OrganismUniProt 与Construct寡聚状态Molecular weight
DENV2 complex 5'-3'
查看序列
GGAGUUGUUAGUCUACGUGGACCGACAAAGACAGAUUCUUUGAGGGAGCUAAGCUCAACGUAGUUCUAACAGUUUUUUAAUUAGAGAGCAGAUCUCUGAUGAAUAACCAACGGAAAAAGGCGAAAAACACGCCUUUCAAUAUGCUGAAACGCGAGAGAAACCAUCUGUUCCAUCUGUUGGAAAGCAAAACUAACAUGAAACAAGGCUAGAAGUCAGGUCGGAUUAAGCCAUAGUACGGAAAAAACUAUGCUACCUGUGAGCCCCGUCCAAGGACGUUAAAAGAAGUCAGGCCAUCAUAAAUGCCAUAGCUUGAGUAAACUAUGCAGCCUGUAGCUCCACCUGAGAAGGUGUAAAAAAUCCGGGAGGCCACAAACCAUGGAAGCUGUACGCAUGGCGUAGUGGACUAGCGGUUAGAGGAGACCCCUCCCUUACAAAUCGCAGCAACAAUGGGGGCCCAAGGCGAGAUGAAGCUGUAGUCUCGCUGGAAGGACUAGAGGUUAGAGGAGACCCCCCCGAAACAAAAAACAGCAUAUUGACGCUGGGAAAGACCAGAGAUCCUGCUGUCUCCUCAGCAUCAUUCCAGGCACAGAACGCCAGAAAAUGGAAUGGUGCUGUUGAAUCAACAGGUUCUCGCCAGAAAAUGGAAUGGUGCUGUUGAAUCAACAGGUUCU
RNA—–—monomer分子数 1217.001 kDa

实验曲线

曲线点数 / 列q range误差质量负强度点来源文件
12574[3]0.0045–0.34 1/A含误差列缺失 0543sasbdb/entries/e3/sasdxe3/source/SASDXE3.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)22.01Å
i0Guinier0.0166891arbitrary
i0P(r)0.01635arbitrary
mwExperimental210.0kDa
mwPorod200.0kDa
porod_volumePorod320.0ų
rgGuinier7.4820.509Å
rgP(r)7.49Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称10 mM Bis-Tris, 100 mM NaCl, 5 mM MgCl2, 15 mM KCl, 5% glycerol缓冲液浓度
pH6.0添加剂
缓冲液说明
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2023-09-10储存 / 测量温度-80.0 / 25.0
曝光时间3.0帧数600
波长0.094样品-探测器距离3.7
光源X-ray synchrotron探测器Eiger 4M
机构 / 束线Diamond Light Source / B21 · Didcot, UK
q range0.045 – 3.4样品体积 / 流速60.0 / 0.16

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可Download文件

类别文件状态大小校验值Download与查看
curvesasbdb/entries/e3/sasdxe3/source/SASDXE3.datdownloaded1176558de73361f5a095528189e0ba1273337e74aaf2dffd2c99dd49aa089cd7292755Download查看原文件源站
full_entry_zipsasbdb/entries/e3/sasdxe3/source/SASDXE3.zipdownloaded1746569eddfdafc0a1ce59798625410936fd78ada9fa0b619a7f111984ae1d78b55e60Download查看原文件源站
pddfsasbdb/entries/e3/sasdxe3/source/SASDXE3.outdownloaded159521503ec5088b8f0e838e8c987af441c613c073b33d86d515f160efbf72e21dd014Download查看原文件源站
sascifsasbdb/entries/e3/sasdxe3/source/SASDXE3.sascifnot_availableDownload查看原文件源站
summarysasbdb/entries/e3/sasdxe3/source/summary.jsondownloaded8808316a64dd53e07f978553d215833551bf1c2fa19ebbc15ade07beea4143ee4713Download查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(8 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:202 个字段值
字段路径原始值
codeSASDXE3
statusPublished
type_of_curveSEC-SAS
angular_unit1/A
project.titleStructural Dynamics of Dengue Virus UTRs and Their Cyclization.
project.publication.titleStructural Dynamics of Dengue Virus UTRs and Their Cyclization.
project.publication.author_listRobinson ZE, Pereira HS, D'Souza MH, Patel TR
project.publication.journalBiophys J
project.publication.doi10.1016/j.bpj.2025.09.004
project.publication.pmid40914810
project.publication.published_date2025 Sep 5
project.statusreleased
project.submitted_date2025-04-10
project.released_date2025-09-09
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experiment.instrument.detector.typenull
experiment.instrument.detector.nameEiger 4M
experiment.instrument.detector.resolution75.0
experiment.instrument.nameDiamond Light Source
experiment.instrument.cityDidcot
experiment.instrument.countryUK
experiment.instrument.beamline_nameB21
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameDENV2 complex 5'-3'
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceGGAGUUGUUAGUCUACGUGGACCGACAAAGACAGAUUCUUUGAGGGAGCUAAGCUCAACGUAGUUCUAACAGUUUUUUAAUUAGAGAGCAGAUCUCUGAUGAAUAACCAACGGAAAAAGGCGAAAAACACGCCUUUCAAUAUGCUGAAACGCGAGAGAAACCAUCUGUUCCAUCUGUUGGAAAGCAAAACUAACAUGAAACAAGGCUAGAAGUCAGGUCGGAUUAAGCCAUAGUACGGAAAAAACUAUGCUACCUGUGAGCCCCGUCCAAGGACGUUAAAAGAAGUCAGGCCAUCAUAAAUGCCAUAGCUUGAGUAAACUAUGCAGCCUGUAGCUCCACCUGAGAAGGUGUAAAAAAUCCGGGAGGCCACAAACCAUGGAAGCUGUACGCAUGGCGUAGUGGACUAGCGGUUAGAGGAGACCCCUCCCUUACAAAUCGCAGCAACAAUGGGGGCCCAAGGCGAGAUGAAGCUGUAGUCUCGCUGGAAGGACUAGAGGUUAGAGGAGACCCCCCCGAAACAAAAAACAGCAUAUUGACGCUGGGAAAGACCAGAGAUCCUGCUGUCUCCUCAGCAUCAUUCCAGGCA CAGAACGCCAGAAAAUGGAAUGGUGCUGUUGAAUCAACAGGUUCUCGCCAGAAAAUGGAAUGGUGCUGUUGAAUCAACAGGUUCU
experiment.sample.molecule[0].organismnull
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeRNA
experiment.sample.molecule[0].uniprot_sequence
experiment.sample.molecule[0].mw217.001
experiment.sample.molecule[0].total_mw217.001
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.buffer.name10 mM Bis-Tris, 100 mM NaCl, 5 mM MgCl2, 15 mM KCl, 5% glycerol
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph6.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameDengue Virus 2 (DENV2) complex 5'-3'
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressLethbridge, AB, Canada
experiment.contributor[0].affiliation[0].full_nameUniversity of Lethbridge
experiment.contributor[0].affiliation[0].webpagehttp://www.uleth.ca/
experiment.contributor[0].contributor_nameTrushar
experiment.contributor[0].contributor_surnamePatel
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2023-09-10
experiment.storage_temperature-80.0
experiment.cell_temperature25.0
experiment.exposure_time3.0
experiment.number_of_frames600
experiment.wavelength0.094
experiment.sample_detector_distance3.7
experiment.concentration_minnull
experiment.concentration_max0.7
experiment.sample_volume60.0
experiment.flow_rate0.16
experiment.s_min0.045
experiment.s_max3.4
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].p_value0.3807
fits[0].fit_residual_plotSASDXE3_fit1_fitresiduals_img.png
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fits[1].p_value0.6175
fits[1].fit_residual_plotSASDXE3_fit2_fitresiduals_img.png
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pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw210.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw200.0
porod_mw_errornull
pddf_i00.01635
pddf_i0_errornull
guinier_i00.0166891
guinier_i0_errornull
pddf_rg7.49
pddf_rg_errornull
guinier_rg7.482
guinier_rg_error0.509
pddf_dmax22.01
pddf_dmax_errornull
porod_volume320.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first34
guinier_point_last132
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDXE3_datloglog_img.png
symmetrynull
last_modified2025-09-09T12:06:58.527283+02:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDXE3
statussuccess
started_at2026-08-11T16:39:42.729932+00:00
finished_at2026-08-11T16:39:51.462868+00:00
source_last_modified2025-09-09T12:06:58.527283+02:00
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查看完整 summary.json 原文
{
  "code": "SASDXE3",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "Structural Dynamics of Dengue Virus UTRs and Their Cyclization.",
    "publication": {
      "title": "Structural Dynamics of Dengue Virus UTRs and Their Cyclization.",
      "author_list": "Robinson ZE, Pereira HS, D'Souza MH, Patel TR",
      "journal": "Biophys J",
      "doi": "10.1016/j.bpj.2025.09.004",
      "pmid": "40914810",
      "published_date": "2025 Sep 5"
    },
    "status": "released",
    "submitted_date": "2025-04-10",
    "released_date": "2025-09-09"
  },
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查看完整 manifest.json 原文
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