SASDXF6

RTX cytotoxin pro-MbxA without acylation (pro-MbxA)

Data type: SASBDB experimental data Status: Published Curve type: SEC-SAS Last updated: 2026-03-02T17:17:55.978050+01:00
▼

1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · RTX cytotoxin pro-MbxA without acylation (pro-MbxA)

Concentration— – 5.3 Buffer / pH50 mM Tris, 100 mM NaCl, 10mM CaCl2 / 7.8
Experimental temperature20.0 Facility / beamlinePETRA III / EMBL P12
Wavelength0.155 nmExposure0.995 s × 3000

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
RTX cytotoxin pro-MbxA without acylation
View sequence
HHHHHHMSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEPNHTETAKKSVDTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKASNVLSTLSSFLGTALAGIELDSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFSSQLAKLGSTISQAKGFSNIGNKLQNLNFSKTNLGLEIITGLLSGISAGFALADKNASTGKKVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVAALITSSIMLAISPLAFMNAADKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGAVSAGVSAAAVGSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYDSRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADAFEDGKKVEAGSNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYINKLKFGRVKNWQVTDGEASSKLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKMNIDGGDGHDRVFYSKDGGFGNITVDGTSATEAGSYTVNRKVARGDIYHEVVKRQETKVGKRTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVFKGSKFNDIFHSGEGDDLLDGGAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDGNDTLYDGTGNDKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLIGKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMALFGTANSVSSNALQPITQPTQGILAPSV
proteinMoraxella bovisQ93GI2—–—monomerMolecule count 199.667 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
12577[3]0.0726985–5.72292 1/nmHas uncertainty columnMissing 081sasbdb/entries/f6/sasdxf6/source/SASDXF6.dat
▼

2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)13.36—nm
i0Guinier0.049073—1/cm
i0P(r)0.0494—1/cm
mwExperimental104.85—kDa
mwPorod95.98—kDa
porod_volumePorod153.56—nm³
rgGuinier3.8030.01nm
rgP(r)3.903—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

▼

3. Source Fits and Models Source Fits & Models

▶

4. Source File Index Source Files

▶

5. Experiment Description and Publication Experiment & Publication

▼

6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name50 mM Tris, 100 mM NaCl, 10mM CaCl2Buffer concentration—
pH7.8Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2022-05-09Storage / measurement temperature10.0 / 20.0
Exposure time0.995Frames3000
Wavelength0.155Sample-to-detector distance3.0
SourceX-ray synchrotronDetectorPilatus 6M
Facility / beamlinePETRA III / EMBL P12 · DESY; Hamburg, Germany
q range0.073 – 5.723Sample volume / flow rate100.0 / 0.5

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

CategoryFileStatusSizeChecksumDownload and View
curvesasbdb/entries/f6/sasdxf6/source/SASDXF6.datdownloaded120959fe2ab71a537a48fed1b621d4781092137962cd9c6519e58f27a20d52dfa9c50cDownloadView source fileSource site
full_entry_zipsasbdb/entries/f6/sasdxf6/source/SASDXF6.zipdownloaded453199f1fc752fd20437750558a7a0137a886e740eb0dc3cd13cbbb02e11f547364628DownloadView source fileSource site
pddfsasbdb/entries/f6/sasdxf6/source/SASDXF6.outdownloaded1856483422fdcd376b11dcbc1b3020a76aae0f93f0848262d6d5be8150ce1b63ce3fa0DownloadView source fileSource site
sascifsasbdb/entries/f6/sasdxf6/source/SASDXF6.sascifnot_available——DownloadView source fileSource site
summarysasbdb/entries/f6/sasdxf6/source/summary.jsondownloaded107619570e6e80a1b254d6489704d65398b6785135e20c36130837ba3fc1c7033f8f5DownloadView source fileSource site
curve:source record
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.dat",
  "role": "curve",
  "sha256": "fe2ab71a537a48fed1b621d4781092137962cd9c6519e58f27a20d52dfa9c50c",
  "size": 120959,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDXF6.dat"
}
full_entry_zip:source record and ZIP contents (8 items)
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.zip",
  "role": "full_entry_zip",
  "sha256": "f1fc752fd20437750558a7a0137a886e740eb0dc3cd13cbbb02e11f547364628",
  "size": 453199,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDXF6.zip",
  "zip_member_count": 8,
  "zip_members": [
    {
      "crc32": "9a95164d",
      "name": "SASDXF6/experimental_data/SASDXF6.dat",
      "size": 120959
    },
    {
      "crc32": "b3193c08",
      "name": "SASDXF6/pddf/SASDXF6.out",
      "size": 185648
    },
    {
      "crc32": "3e45ca81",
      "name": "SASDXF6/SASDXF6_fit1.fit",
      "size": 128432
    },
    {
      "crc32": "4505b6ac",
      "name": "SASDXF6/SASDXF6_fit1_model1.pdb",
      "size": 569916
    },
    {
      "crc32": "c925cf5e",
      "name": "SASDXF6/SASDXF6_fit2.fir",
      "size": 109064
    },
    {
      "crc32": "282e6f0c",
      "name": "SASDXF6/SASDXF6_fit2_model1.pdb",
      "size": 75584
    },
    {
      "crc32": "f12ba3bb",
      "name": "SASDXF6/SASDXF6_fit3.fit",
      "size": 128432
    },
    {
      "crc32": "2582e80f",
      "name": "SASDXF6/SASDXF6_fit3_model1.pdb",
      "size": 569106
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf:source record
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.out",
  "role": "pddf",
  "sha256": "3422fdcd376b11dcbc1b3020a76aae0f93f0848262d6d5be8150ce1b63ce3fa0",
  "size": 185648,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDXF6.out"
}
sascif:source record
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.sascif",
  "role": "sascif",
  "status": "not_available",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif"
}
summary:source record
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/summary.json",
  "sha256": "9570e6e80a1b254d6489704d65398b6785135e20c36130837ba3fc1c7033f8f5",
  "size": 10761,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDXF6/"
}

All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:202 field values
Field pathRaw value
codeSASDXF6
statusPublished
type_of_curveSEC-SAS
angular_unit1/nm
project.titleAcylation of the RTX toxin MbxA stimulates host membrane disruption through a specific interaction with cholesterol
project.publication.titleAcylation of the RTX toxin MbxA stimulates host membrane disruption through a specific interaction with cholesterol
project.publication.author_listChacko F, Ganz S, Pfitzer-Bilsing A, Hänsch S, Westhoff P, Weidtkamp-Peters S, Smits S, Exterkate M, Schmitt L
project.publication.journalBiochimica et Biophysica Acta (BBA) - Biomembranes
project.publication.doi10.1016/j.bbamem.2025.184487
project.publication.pmidnull
project.publication.published_date2025 Nov
project.statusreleased
project.submitted_date2025-04-02
project.released_date2026-03-02
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDXF6.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDXF6.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDXF6_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 6M
experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameRTX cytotoxin pro-MbxA without acylation
experiment.sample.molecule[0].short_namepro-MbxA
experiment.sample.molecule[0].sequenceHHHHHHMSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEPNHTETAKKSV DTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKASNVLSTLSSFLGTALAGIEL DSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFSSQLAKLGSTISQAKGFSNIGNKLQNLNFSK TNLGLEIITGLLSGISAGFALADKNASTGKKVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVA ALITSSIMLAISPLAFMNAADKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGA VSAGVSAAAVGSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYD SRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADAFEDGKKVEAG SNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYINKLKFGRVKNWQVTDGEASS KLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKMNIDGGDGHDRVFYSKDGGFGNITVDGTSAT EAGSYTVNRKVARGDIYHEVVKRQETKVGKRTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVF KGSKFNDIFHSGEGDDLLDGGAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDG NDTLYDGTGNDKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLI GKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMALFGTANSVSSN ALQPITQPTQGILAPSV
experiment.sample.molecule[0].organismMoraxella bovis
experiment.sample.molecule[0].uniprot_codeQ93GI2
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEP NHTETAKKSVDTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKA SNVLSTLSSFLGTALAGIELDSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFS SQLAKLGSTISQAKGFSNIGNKLQNLNFSKTNLGLEIITGLLSGISAGFALADKNASTGK KVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVAALITSSIMLAISPLAFMNAA DKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGAVSAGVSAAAV GSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYD SRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADA FEDGKKVEAGSNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYI NKLKFGRVKNWQVTDGEASSKLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKM NIDGGDGHDRVFYSKDGGFGNITVDGTSATEAGSYTVNRKVARGDIYHEVVKRQETKVGK RTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVFKGSKFNDIFHSGEGDDLLDG GAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDGNDTLYDGTGN DKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLI GKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMAL FGTANSVSSNALQPITQPTQGILAPSV
experiment.sample.molecule[0].mw99.667
experiment.sample.molecule[0].total_mw99.667
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnon-acylated form, pro-MbxA
experiment.sample.buffer.name50 mM Tris, 100 mM NaCl, 10mM CaCl2
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.8
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameRTX cytotoxin pro-MbxA without acylation (pro-MbxA)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressDüsseldorf, Germany
experiment.contributor[0].affiliation[0].full_nameHeinrich Heine University Düsseldorf
experiment.contributor[0].affiliation[0].webpagehttps://www.uni-duesseldorf.de
experiment.contributor[0].contributor_nameJens
experiment.contributor[0].contributor_surnameReiners
experiment.contributor[0].orcid
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2022-05-09
experiment.storage_temperature10.0
experiment.cell_temperature20.0
experiment.exposure_time0.995
experiment.number_of_frames3000
experiment.wavelength0.155
experiment.sample_detector_distance3.0
experiment.concentration_minnull
experiment.concentration_max5.3
experiment.sample_volume100.0
experiment.flow_rate0.5
experiment.s_min0.073
experiment.s_max5.723
experiment.total_exposure_timenull
experiment.seccolumn5
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit1_model1_img.png
fits[0].models[0].softwareSREFLEX
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
fits[0].models[0].software_versionATSAS 3.0.5 (r13837)
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDXF6_fit1_model1.pdb
fits[0].models[0].model_mw99.64
fits[0].models[0].bead_radiusnull
fits[0].models[0].loghttps://www.sasbdb.org/media/log_files/report_3lr1YNR.txt
fits[0].models[0].symmetryP1
fits[0].models[0].commentnull
fits[0].models[0].user402
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit1_fixed_fit_img.png
fits[0].softwareSREFLEX
fits[0].chi_square_value1.178
fits[0].p_value0.0
fits[0].fit_residual_plotSASDXF6_fit1_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDXF6_fit1.fit
fits[0].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/log_pUmvNmS.txt
fits[0].software_versionATSAS 3.0.5 (r13837)
fits[0].description
fits[1].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit2_model1_img.png
fits[1].models[0].softwareGASBOR
fits[1].models[0].pdb_link[]
fits[1].models[0].model_titlenull
fits[1].models[0].type_of_modeldummy
fits[1].models[0].software_versionATSAS 3.0.5 (r13837)
fits[1].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDXF6_fit2_model1.pdb
fits[1].models[0].model_mwnull
fits[1].models[0].bead_radiusnull
fits[1].models[0].loghttps://www.sasbdb.org/media/log_files/mbxP1g8.log
fits[1].models[0].symmetryP1
fits[1].models[0].commentnull
fits[1].models[0].user402
fits[1].fit_unit1/A
fits[1].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit2_fixed_fit_img.png
fits[1].softwareGASBOR
fits[1].chi_square_value1.19
fits[1].p_value0.0
fits[1].fit_residual_plotSASDXF6_fit2_fitresiduals_img.png
fits[1].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDXF6_fit2.fir
fits[1].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/mbxP1g8.log
fits[1].software_versionATSAS 3.0.5 (r13837)
fits[1].description
fits[2].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit3_model1_img.png
fits[2].models[0].softwareAlphaFold
fits[2].models[0].pdb_link[]
fits[2].models[0].model_titleSASDXF6_alfafold_fit
fits[2].models[0].type_of_modelatomic
fits[2].models[0].software_versionnull
fits[2].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDXF6_fit3_model1.pdb
fits[2].models[0].model_mw99.64
fits[2].models[0].bead_radius1.9
fits[2].models[0].lognull
fits[2].models[0].symmetrynull
fits[2].models[0].commentnull
fits[2].models[0].user402
fits[2].fit_unit1/A
fits[2].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit3_fixed_fit_img.png
fits[2].softwareCRYSOL
fits[2].chi_square_value13.232
fits[2].p_value0.0
fits[2].fit_residual_plotSASDXF6_fit3_fitresiduals_img.png
fits[2].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDXF6_fit3.fit
fits[2].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/SASDXF3_fit1_model1.log
fits[2].software_versionnull
fits[2].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unit1/cm
experimental_mw104.85
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw95.98
porod_mw_errornull
pddf_i00.0494
pddf_i0_errornull
guinier_i00.049073
guinier_i0_errornull
pddf_rg3.903
pddf_rg_errornull
guinier_rg3.803
guinier_rg_error0.01
pddf_dmax13.36
pddf_dmax_errornull
porod_volume153.56
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first41
guinier_point_last123
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDXF6_datloglog_img.png
symmetrynull
last_modified2026-03-02T17:17:55.978050+01:00
bragg_peak[]
manifest.json:34 field values
Field pathRaw value
codeSASDXF6
statussuccess
started_at2026-08-11T13:59:34.827346+00:00
finished_at2026-08-11T13:59:50.257978+00:00
source_last_modified2026-03-02T17:17:55.978050+01:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDXF6/
files[0].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/summary.json
files[0].size10761
files[0].sha2569570e6e80a1b254d6489704d65398b6785135e20c36130837ba3fc1c7033f8f5
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDXF6.dat
files[1].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.dat
files[1].size120959
files[1].sha256fe2ab71a537a48fed1b621d4781092137962cd9c6519e58f27a20d52dfa9c50c
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDXF6.out
files[2].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.out
files[2].size185648
files[2].sha2563422fdcd376b11dcbc1b3020a76aae0f93f0848262d6d5be8150ce1b63ce3fa0
files[2].rolepddf
files[3].statusnot_available
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif
files[3].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.sascif
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDXF6.zip
files[4].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.zip
files[4].size453199
files[4].sha256f1fc752fd20437750558a7a0137a886e740eb0dc3cd13cbbb02e11f547364628
files[4].rolefull_entry_zip
files[4].zip_member_count8
files[4].zip_validationcentral_directory_readable
View the complete summary.json source
{
  "code": "SASDXF6",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/nm",
  "project": {
    "title": "Acylation of the RTX toxin MbxA stimulates host membrane disruption through a specific interaction with cholesterol",
    "publication": {
      "title": "Acylation of the RTX toxin MbxA stimulates host membrane disruption through a specific interaction with cholesterol",
      "author_list": "Chacko F, Ganz S, Pfitzer-Bilsing A, Hänsch S, Westhoff P, Weidtkamp-Peters S, Smits S, Exterkate M, Schmitt L",
      "journal": "Biochimica et Biophysica Acta (BBA) - Biomembranes",
      "doi": "10.1016/j.bbamem.2025.184487",
      "pmid": null,
      "published_date": "2025 Nov"
    },
    "status": "released",
    "submitted_date": "2025-04-02",
    "released_date": "2026-03-02"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDXF6.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDXF6.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDXF6_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus 6M",
        "resolution": null
      },
      "name": "PETRA III",
      "city": "DESY; Hamburg",
      "country": "Germany",
      "beamline_name": "EMBL P12",
      "beam_geometry": null,
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "RTX cytotoxin pro-MbxA without acylation",
          "short_name": "pro-MbxA",
          "sequence": "HHHHHHMSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEPNHTETAKKSV\r\nDTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKASNVLSTLSSFLGTALAGIEL\r\nDSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFSSQLAKLGSTISQAKGFSNIGNKLQNLNFSK\r\nTNLGLEIITGLLSGISAGFALADKNASTGKKVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVA\r\nALITSSIMLAISPLAFMNAADKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGA\r\nVSAGVSAAAVGSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYD\r\nSRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADAFEDGKKVEAG\r\nSNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYINKLKFGRVKNWQVTDGEASS\r\nKLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKMNIDGGDGHDRVFYSKDGGFGNITVDGTSAT\r\nEAGSYTVNRKVARGDIYHEVVKRQETKVGKRTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVF\r\nKGSKFNDIFHSGEGDDLLDGGAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDG\r\nNDTLYDGTGNDKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLI\r\nGKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMALFGTANSVSSN\r\nALQPITQPTQGILAPSV",
          "organism": "Moraxella bovis",
          "uniprot_code": "Q93GI2",
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEP\nNHTETAKKSVDTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKA\nSNVLSTLSSFLGTALAGIELDSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFS\nSQLAKLGSTISQAKGFSNIGNKLQNLNFSKTNLGLEIITGLLSGISAGFALADKNASTGK\nKVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVAALITSSIMLAISPLAFMNAA\nDKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGAVSAGVSAAAV\nGSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYD\nSRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADA\nFEDGKKVEAGSNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYI\nNKLKFGRVKNWQVTDGEASSKLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKM\nNIDGGDGHDRVFYSKDGGFGNITVDGTSATEAGSYTVNRKVARGDIYHEVVKRQETKVGK\nRTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVFKGSKFNDIFHSGEGDDLLDG\nGAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDGNDTLYDGTGN\nDKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLI\nGKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMAL\nFGTANSVSSNALQPITQPTQGILAPSV",
          "mw": 99.667,
          "total_mw": 99.667,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": "non-acylated form, pro-MbxA"
        }
      ],
      "buffer": {
        "name": "50 mM Tris, 100 mM NaCl, 10mM CaCl2",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.8,
        "deuteration": null
      },
      "purity_method": null,
      "name": "RTX cytotoxin pro-MbxA without acylation (pro-MbxA)",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Düsseldorf, Germany",
            "full_name": "Heinrich Heine University Düsseldorf",
            "webpage": "https://www.uni-duesseldorf.de"
          }
        ],
        "contributor_name": "Jens",
        "contributor_surname": "Reiners",
        "orcid": ""
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2022-05-09",
    "storage_temperature": 10.0,
    "cell_temperature": 20.0,
    "exposure_time": 0.995,
    "number_of_frames": 3000,
    "wavelength": 0.155,
    "sample_detector_distance": 3.0,
    "concentration_min": null,
    "concentration_max": 5.3,
    "sample_volume": 100.0,
    "flow_rate": 0.5,
    "s_min": 0.073,
    "s_max": 5.723,
    "total_exposure_time": null,
    "seccolumn": 5
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit1_model1_img.png",
          "software": "SREFLEX",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": "ATSAS 3.0.5 (r13837)",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDXF6_fit1_model1.pdb",
          "model_mw": 99.64,
          "bead_radius": null,
          "log": "https://www.sasbdb.org/media/log_files/report_3lr1YNR.txt",
          "symmetry": "P1",
          "comment": null,
          "user": 402
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit1_fixed_fit_img.png",
      "software": "SREFLEX",
      "chi_square_value": 1.178,
      "p_value": 0.0,
      "fit_residual_plot": "SASDXF6_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDXF6_fit1.fit",
      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/log_pUmvNmS.txt",
      "software_version": "ATSAS 3.0.5 (r13837)",
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit2_model1_img.png",
          "software": "GASBOR",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "ATSAS 3.0.5 (r13837)",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDXF6_fit2_model1.pdb",
          "model_mw": null,
          "bead_radius": null,
          "log": "https://www.sasbdb.org/media/log_files/mbxP1g8.log",
          "symmetry": "P1",
          "comment": null,
          "user": 402
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit2_fixed_fit_img.png",
      "software": "GASBOR",
      "chi_square_value": 1.19,
      "p_value": 0.0,
      "fit_residual_plot": "SASDXF6_fit2_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDXF6_fit2.fir",
      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/mbxP1g8.log",
      "software_version": "ATSAS 3.0.5 (r13837)",
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit3_model1_img.png",
          "software": "AlphaFold",
          "pdb_link": [],
          "model_title": "SASDXF6_alfafold_fit",
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDXF6_fit3_model1.pdb",
          "model_mw": 99.64,
          "bead_radius": 1.9,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 402
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit3_fixed_fit_img.png",
      "software": "CRYSOL",
      "chi_square_value": 13.232,
      "p_value": 0.0,
      "fit_residual_plot": "SASDXF6_fit3_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDXF6_fit3.fit",
      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/SASDXF3_fit1_model1.log",
      "software_version": null,
      "description": ""
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": "1/cm",
  "experimental_mw": 104.85,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 95.98,
  "porod_mw_error": null,
  "pddf_i0": 0.0494,
  "pddf_i0_error": null,
  "guinier_i0": 0.049073,
  "guinier_i0_error": null,
  "pddf_rg": 3.903,
  "pddf_rg_error": null,
  "guinier_rg": 3.803,
  "guinier_rg_error": 0.01,
  "pddf_dmax": 13.36,
  "pddf_dmax_error": null,
  "porod_volume": 153.56,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 41,
  "guinier_point_last": 123,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDXF6_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2026-03-02T17:17:55.978050+01:00",
  "bragg_peak": []
}
View the complete manifest.json source
{
  "code": "SASDXF6",
  "status": "success",
  "started_at": "2026-08-11T13:59:34.827346+00:00",
  "finished_at": "2026-08-11T13:59:50.257978+00:00",
  "source_last_modified": "2026-03-02T17:17:55.978050+01:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDXF6/",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/summary.json",
      "size": 10761,
      "sha256": "9570e6e80a1b254d6489704d65398b6785135e20c36130837ba3fc1c7033f8f5"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDXF6.dat",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.dat",
      "size": 120959,
      "sha256": "fe2ab71a537a48fed1b621d4781092137962cd9c6519e58f27a20d52dfa9c50c",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDXF6.out",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.out",
      "size": 185648,
      "sha256": "3422fdcd376b11dcbc1b3020a76aae0f93f0848262d6d5be8150ce1b63ce3fa0",
      "role": "pddf"
    },
    {
      "status": "not_available",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.sascif",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDXF6.zip",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.zip",
      "size": 453199,
      "sha256": "f1fc752fd20437750558a7a0137a886e740eb0dc3cd13cbbb02e11f547364628",
      "role": "full_entry_zip",
      "zip_member_count": 8,
      "zip_validation": "central_directory_readable"
    }
  ]
}