SASDXF6

RTX cytotoxin pro-MbxA without acylation (pro-MbxA)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:SEC-SAS 最后更新:2026-03-02T17:17:55.978050+01:00

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · RTX cytotoxin pro-MbxA without acylation (pro-MbxA)

浓度— – 5.3 缓冲液 / pH50 mM Tris, 100 mM NaCl, 10mM CaCl2 / 7.8
Experimental temperature20.0 设备 / 束线PETRA III / EMBL P12
波长0.155 nm曝光0.995 s × 3000

分子组分

组分类型 / OrganismUniProt 与Construct寡聚状态Molecular weight
RTX cytotoxin pro-MbxA without acylation
查看序列
HHHHHHMSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEPNHTETAKKSVDTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKASNVLSTLSSFLGTALAGIELDSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFSSQLAKLGSTISQAKGFSNIGNKLQNLNFSKTNLGLEIITGLLSGISAGFALADKNASTGKKVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVAALITSSIMLAISPLAFMNAADKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGAVSAGVSAAAVGSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYDSRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADAFEDGKKVEAGSNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYINKLKFGRVKNWQVTDGEASSKLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKMNIDGGDGHDRVFYSKDGGFGNITVDGTSATEAGSYTVNRKVARGDIYHEVVKRQETKVGKRTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVFKGSKFNDIFHSGEGDDLLDGGAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDGNDTLYDGTGNDKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLIGKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMALFGTANSVSSNALQPITQPTQGILAPSV
proteinMoraxella bovisQ93GI2—–—monomer分子数 199.667 kDa

实验曲线

曲线点数 / 列q range误差质量负强度点来源文件
12577[3]0.0726985–5.72292 1/nm含误差列缺失 081sasbdb/entries/f6/sasdxf6/source/SASDXF6.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)13.36nm
i0Guinier0.0490731/cm
i0P(r)0.04941/cm
mwExperimental104.85kDa
mwPorod95.98kDa
porod_volumePorod153.56nm³
rgGuinier3.8030.01nm
rgP(r)3.903nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50 mM Tris, 100 mM NaCl, 10mM CaCl2缓冲液浓度
pH7.8添加剂
缓冲液说明
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2022-05-09储存 / 测量温度10.0 / 20.0
曝光时间0.995帧数3000
波长0.155样品-探测器距离3.0
光源X-ray synchrotron探测器Pilatus 6M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q range0.073 – 5.723样品体积 / 流速100.0 / 0.5

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可Download文件

类别文件状态大小校验值Download与查看
curvesasbdb/entries/f6/sasdxf6/source/SASDXF6.datdownloaded120959fe2ab71a537a48fed1b621d4781092137962cd9c6519e58f27a20d52dfa9c50cDownload查看原文件源站
full_entry_zipsasbdb/entries/f6/sasdxf6/source/SASDXF6.zipdownloaded453199f1fc752fd20437750558a7a0137a886e740eb0dc3cd13cbbb02e11f547364628Download查看原文件源站
pddfsasbdb/entries/f6/sasdxf6/source/SASDXF6.outdownloaded1856483422fdcd376b11dcbc1b3020a76aae0f93f0848262d6d5be8150ce1b63ce3fa0Download查看原文件源站
sascifsasbdb/entries/f6/sasdxf6/source/SASDXF6.sascifnot_availableDownload查看原文件源站
summarysasbdb/entries/f6/sasdxf6/source/summary.jsondownloaded107619570e6e80a1b254d6489704d65398b6785135e20c36130837ba3fc1c7033f8f5Download查看原文件源站
curve:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.dat",
  "role": "curve",
  "sha256": "fe2ab71a537a48fed1b621d4781092137962cd9c6519e58f27a20d52dfa9c50c",
  "size": 120959,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDXF6.dat"
}
full_entry_zip:来源记录与 ZIP 内部目录(8 项)
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.zip",
  "role": "full_entry_zip",
  "sha256": "f1fc752fd20437750558a7a0137a886e740eb0dc3cd13cbbb02e11f547364628",
  "size": 453199,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDXF6.zip",
  "zip_member_count": 8,
  "zip_members": [
    {
      "crc32": "9a95164d",
      "name": "SASDXF6/experimental_data/SASDXF6.dat",
      "size": 120959
    },
    {
      "crc32": "b3193c08",
      "name": "SASDXF6/pddf/SASDXF6.out",
      "size": 185648
    },
    {
      "crc32": "3e45ca81",
      "name": "SASDXF6/SASDXF6_fit1.fit",
      "size": 128432
    },
    {
      "crc32": "4505b6ac",
      "name": "SASDXF6/SASDXF6_fit1_model1.pdb",
      "size": 569916
    },
    {
      "crc32": "c925cf5e",
      "name": "SASDXF6/SASDXF6_fit2.fir",
      "size": 109064
    },
    {
      "crc32": "282e6f0c",
      "name": "SASDXF6/SASDXF6_fit2_model1.pdb",
      "size": 75584
    },
    {
      "crc32": "f12ba3bb",
      "name": "SASDXF6/SASDXF6_fit3.fit",
      "size": 128432
    },
    {
      "crc32": "2582e80f",
      "name": "SASDXF6/SASDXF6_fit3_model1.pdb",
      "size": 569106
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.out",
  "role": "pddf",
  "sha256": "3422fdcd376b11dcbc1b3020a76aae0f93f0848262d6d5be8150ce1b63ce3fa0",
  "size": 185648,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDXF6.out"
}
sascif:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.sascif",
  "role": "sascif",
  "status": "not_available",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif"
}
summary:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/summary.json",
  "sha256": "9570e6e80a1b254d6489704d65398b6785135e20c36130837ba3fc1c7033f8f5",
  "size": 10761,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDXF6/"
}

全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:202 个字段值
字段路径原始值
codeSASDXF6
statusPublished
type_of_curveSEC-SAS
angular_unit1/nm
project.titleAcylation of the RTX toxin MbxA stimulates host membrane disruption through a specific interaction with cholesterol
project.publication.titleAcylation of the RTX toxin MbxA stimulates host membrane disruption through a specific interaction with cholesterol
project.publication.author_listChacko F, Ganz S, Pfitzer-Bilsing A, Hänsch S, Westhoff P, Weidtkamp-Peters S, Smits S, Exterkate M, Schmitt L
project.publication.journalBiochimica et Biophysica Acta (BBA) - Biomembranes
project.publication.doi10.1016/j.bbamem.2025.184487
project.publication.pmidnull
project.publication.published_date2025 Nov
project.statusreleased
project.submitted_date2025-04-02
project.released_date2026-03-02
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDXF6.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDXF6.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDXF6_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 6M
experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameRTX cytotoxin pro-MbxA without acylation
experiment.sample.molecule[0].short_namepro-MbxA
experiment.sample.molecule[0].sequenceHHHHHHMSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEPNHTETAKKSV DTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKASNVLSTLSSFLGTALAGIEL DSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFSSQLAKLGSTISQAKGFSNIGNKLQNLNFSK TNLGLEIITGLLSGISAGFALADKNASTGKKVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVA ALITSSIMLAISPLAFMNAADKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGA VSAGVSAAAVGSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYD SRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADAFEDGKKVEAG SNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYINKLKFGRVKNWQVTDGEASS KLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKMNIDGGDGHDRVFYSKDGGFGNITVDGTSAT EAGSYTVNRKVARGDIYHEVVKRQETKVGKRTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVF KGSKFNDIFHSGEGDDLLDGGAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDG NDTLYDGTGNDKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLI GKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMALFGTANSVSSN ALQPITQPTQGILAPSV
experiment.sample.molecule[0].organismMoraxella bovis
experiment.sample.molecule[0].uniprot_codeQ93GI2
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEP NHTETAKKSVDTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKA SNVLSTLSSFLGTALAGIELDSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFS SQLAKLGSTISQAKGFSNIGNKLQNLNFSKTNLGLEIITGLLSGISAGFALADKNASTGK KVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVAALITSSIMLAISPLAFMNAA DKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGAVSAGVSAAAV GSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYD SRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADA FEDGKKVEAGSNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYI NKLKFGRVKNWQVTDGEASSKLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKM NIDGGDGHDRVFYSKDGGFGNITVDGTSATEAGSYTVNRKVARGDIYHEVVKRQETKVGK RTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVFKGSKFNDIFHSGEGDDLLDG GAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDGNDTLYDGTGN DKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLI GKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMAL FGTANSVSSNALQPITQPTQGILAPSV
experiment.sample.molecule[0].mw99.667
experiment.sample.molecule[0].total_mw99.667
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnon-acylated form, pro-MbxA
experiment.sample.buffer.name50 mM Tris, 100 mM NaCl, 10mM CaCl2
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.8
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameRTX cytotoxin pro-MbxA without acylation (pro-MbxA)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressDüsseldorf, Germany
experiment.contributor[0].affiliation[0].full_nameHeinrich Heine University Düsseldorf
experiment.contributor[0].affiliation[0].webpagehttps://www.uni-duesseldorf.de
experiment.contributor[0].contributor_nameJens
experiment.contributor[0].contributor_surnameReiners
experiment.contributor[0].orcid
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2022-05-09
experiment.storage_temperature10.0
experiment.cell_temperature20.0
experiment.exposure_time0.995
experiment.number_of_frames3000
experiment.wavelength0.155
experiment.sample_detector_distance3.0
experiment.concentration_minnull
experiment.concentration_max5.3
experiment.sample_volume100.0
experiment.flow_rate0.5
experiment.s_min0.073
experiment.s_max5.723
experiment.total_exposure_timenull
experiment.seccolumn5
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit1_model1_img.png
fits[0].models[0].softwareSREFLEX
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
fits[0].models[0].software_versionATSAS 3.0.5 (r13837)
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDXF6_fit1_model1.pdb
fits[0].models[0].model_mw99.64
fits[0].models[0].bead_radiusnull
fits[0].models[0].loghttps://www.sasbdb.org/media/log_files/report_3lr1YNR.txt
fits[0].models[0].symmetryP1
fits[0].models[0].commentnull
fits[0].models[0].user402
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit1_fixed_fit_img.png
fits[0].softwareSREFLEX
fits[0].chi_square_value1.178
fits[0].p_value0.0
fits[0].fit_residual_plotSASDXF6_fit1_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDXF6_fit1.fit
fits[0].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/log_pUmvNmS.txt
fits[0].software_versionATSAS 3.0.5 (r13837)
fits[0].description
fits[1].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit2_model1_img.png
fits[1].models[0].softwareGASBOR
fits[1].models[0].pdb_link[]
fits[1].models[0].model_titlenull
fits[1].models[0].type_of_modeldummy
fits[1].models[0].software_versionATSAS 3.0.5 (r13837)
fits[1].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDXF6_fit2_model1.pdb
fits[1].models[0].model_mwnull
fits[1].models[0].bead_radiusnull
fits[1].models[0].loghttps://www.sasbdb.org/media/log_files/mbxP1g8.log
fits[1].models[0].symmetryP1
fits[1].models[0].commentnull
fits[1].models[0].user402
fits[1].fit_unit1/A
fits[1].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit2_fixed_fit_img.png
fits[1].softwareGASBOR
fits[1].chi_square_value1.19
fits[1].p_value0.0
fits[1].fit_residual_plotSASDXF6_fit2_fitresiduals_img.png
fits[1].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDXF6_fit2.fir
fits[1].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/mbxP1g8.log
fits[1].software_versionATSAS 3.0.5 (r13837)
fits[1].description
fits[2].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit3_model1_img.png
fits[2].models[0].softwareAlphaFold
fits[2].models[0].pdb_link[]
fits[2].models[0].model_titleSASDXF6_alfafold_fit
fits[2].models[0].type_of_modelatomic
fits[2].models[0].software_versionnull
fits[2].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDXF6_fit3_model1.pdb
fits[2].models[0].model_mw99.64
fits[2].models[0].bead_radius1.9
fits[2].models[0].lognull
fits[2].models[0].symmetrynull
fits[2].models[0].commentnull
fits[2].models[0].user402
fits[2].fit_unit1/A
fits[2].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit3_fixed_fit_img.png
fits[2].softwareCRYSOL
fits[2].chi_square_value13.232
fits[2].p_value0.0
fits[2].fit_residual_plotSASDXF6_fit3_fitresiduals_img.png
fits[2].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDXF6_fit3.fit
fits[2].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/SASDXF3_fit1_model1.log
fits[2].software_versionnull
fits[2].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unit1/cm
experimental_mw104.85
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw95.98
porod_mw_errornull
pddf_i00.0494
pddf_i0_errornull
guinier_i00.049073
guinier_i0_errornull
pddf_rg3.903
pddf_rg_errornull
guinier_rg3.803
guinier_rg_error0.01
pddf_dmax13.36
pddf_dmax_errornull
porod_volume153.56
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first41
guinier_point_last123
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDXF6_datloglog_img.png
symmetrynull
last_modified2026-03-02T17:17:55.978050+01:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDXF6
statussuccess
started_at2026-08-11T13:59:34.827346+00:00
finished_at2026-08-11T13:59:50.257978+00:00
source_last_modified2026-03-02T17:17:55.978050+01:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDXF6/
files[0].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/summary.json
files[0].size10761
files[0].sha2569570e6e80a1b254d6489704d65398b6785135e20c36130837ba3fc1c7033f8f5
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDXF6.dat
files[1].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.dat
files[1].size120959
files[1].sha256fe2ab71a537a48fed1b621d4781092137962cd9c6519e58f27a20d52dfa9c50c
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDXF6.out
files[2].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.out
files[2].size185648
files[2].sha2563422fdcd376b11dcbc1b3020a76aae0f93f0848262d6d5be8150ce1b63ce3fa0
files[2].rolepddf
files[3].statusnot_available
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif
files[3].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.sascif
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDXF6.zip
files[4].path/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.zip
files[4].size453199
files[4].sha256f1fc752fd20437750558a7a0137a886e740eb0dc3cd13cbbb02e11f547364628
files[4].rolefull_entry_zip
files[4].zip_member_count8
files[4].zip_validationcentral_directory_readable
查看完整 summary.json 原文
{
  "code": "SASDXF6",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/nm",
  "project": {
    "title": "Acylation of the RTX toxin MbxA stimulates host membrane disruption through a specific interaction with cholesterol",
    "publication": {
      "title": "Acylation of the RTX toxin MbxA stimulates host membrane disruption through a specific interaction with cholesterol",
      "author_list": "Chacko F, Ganz S, Pfitzer-Bilsing A, Hänsch S, Westhoff P, Weidtkamp-Peters S, Smits S, Exterkate M, Schmitt L",
      "journal": "Biochimica et Biophysica Acta (BBA) - Biomembranes",
      "doi": "10.1016/j.bbamem.2025.184487",
      "pmid": null,
      "published_date": "2025 Nov"
    },
    "status": "released",
    "submitted_date": "2025-04-02",
    "released_date": "2026-03-02"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDXF6.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDXF6.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDXF6_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF6_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus 6M",
        "resolution": null
      },
      "name": "PETRA III",
      "city": "DESY; Hamburg",
      "country": "Germany",
      "beamline_name": "EMBL P12",
      "beam_geometry": null,
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "RTX cytotoxin pro-MbxA without acylation",
          "short_name": "pro-MbxA",
          "sequence": "HHHHHHMSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEPNHTETAKKSV\r\nDTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKASNVLSTLSSFLGTALAGIEL\r\nDSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFSSQLAKLGSTISQAKGFSNIGNKLQNLNFSK\r\nTNLGLEIITGLLSGISAGFALADKNASTGKKVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVA\r\nALITSSIMLAISPLAFMNAADKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGA\r\nVSAGVSAAAVGSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYD\r\nSRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADAFEDGKKVEAG\r\nSNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYINKLKFGRVKNWQVTDGEASS\r\nKLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKMNIDGGDGHDRVFYSKDGGFGNITVDGTSAT\r\nEAGSYTVNRKVARGDIYHEVVKRQETKVGKRTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVF\r\nKGSKFNDIFHSGEGDDLLDGGAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDG\r\nNDTLYDGTGNDKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLI\r\nGKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMALFGTANSVSSN\r\nALQPITQPTQGILAPSV",
          "organism": "Moraxella bovis",
          "uniprot_code": "Q93GI2",
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MSNINVIKSNIQAGLNSTKSGLKNLYLAIPKDYDPQKGGTLNDFIKAADELGIARLAEEP\nNHTETAKKSVDTVNQFLSLTQTGIAISATKLEKFLQKHSTNKLAKGLDSVENIDRKLGKA\nSNVLSTLSSFLGTALAGIELDSLIKKGDAAPDALAKASIDLINEIIGNLSQSTQTIEAFS\nSQLAKLGSTISQAKGFSNIGNKLQNLNFSKTNLGLEIITGLLSGISAGFALADKNASTGK\nKVAAGFELSNQVIGNVTKAISSYVLAQRVAAGLSTTGAVAALITSSIMLAISPLAFMNAA\nDKFNHANALDEFAKQFRKFGYDGDHLLAEYQRGVGTIEASLTTISTALGAVSAGVSAAAV\nGSAVGAPIALLVAGVTGLISGILEASKQAMFESVANRLQGKILEWEKQNGGQNYFDKGYD\nSRYAAYLANNLKFLSELNKELEAERVIAITQQRWDNNIGELAGITKLGERIKSGKAYADA\nFEDGKKVEAGSNITLDAKTGIIDISNSNGKKTQALHFTSPLLTAGTESRERLTNGKYSYI\nNKLKFGRVKNWQVTDGEASSKLDFSKVIQRVAETEGTDEIGLIVNAKAGNDDIFVGQGKM\nNIDGGDGHDRVFYSKDGGFGNITVDGTSATEAGSYTVNRKVARGDIYHEVVKRQETKVGK\nRTETIQYRDYELRKVGYGYQSTDNLKSVEEVIGSQFNDVFKGSKFNDIFHSGEGDDLLDG\nGAGDDRLFGGKGNDRLSGDEGDDLLDGGSGDDVLNGGAGNDVYIFRKGDGNDTLYDGTGN\nDKLAFADANISDIMIERTKEGIIVKRNDHSGSINIPRWYITSNLQNYQSNKTDHKIEQLI\nGKDGSYITSDQIDKILQDKKDGTVITSQELKKLADENKSQKLSASDIASSLNKLVGSMAL\nFGTANSVSSNALQPITQPTQGILAPSV",
          "mw": 99.667,
          "total_mw": 99.667,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": "non-acylated form, pro-MbxA"
        }
      ],
      "buffer": {
        "name": "50 mM Tris, 100 mM NaCl, 10mM CaCl2",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.8,
        "deuteration": null
      },
      "purity_method": null,
      "name": "RTX cytotoxin pro-MbxA without acylation (pro-MbxA)",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Düsseldorf, Germany",
            "full_name": "Heinrich Heine University Düsseldorf",
            "webpage": "https://www.uni-duesseldorf.de"
          }
        ],
        "contributor_name": "Jens",
        "contributor_surname": "Reiners",
        "orcid": ""
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2022-05-09",
    "storage_temperature": 10.0,
    "cell_temperature": 20.0,
    "exposure_time": 0.995,
    "number_of_frames": 3000,
    "wavelength": 0.155,
    "sample_detector_distance": 3.0,
    "concentration_min": null,
    "concentration_max": 5.3,
    "sample_volume": 100.0,
    "flow_rate": 0.5,
    "s_min": 0.073,
    "s_max": 5.723,
    "total_exposure_time": null,
    "seccolumn": 5
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit1_model1_img.png",
          "software": "SREFLEX",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": "ATSAS 3.0.5 (r13837)",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDXF6_fit1_model1.pdb",
          "model_mw": 99.64,
          "bead_radius": null,
          "log": "https://www.sasbdb.org/media/log_files/report_3lr1YNR.txt",
          "symmetry": "P1",
          "comment": null,
          "user": 402
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit1_fixed_fit_img.png",
      "software": "SREFLEX",
      "chi_square_value": 1.178,
      "p_value": 0.0,
      "fit_residual_plot": "SASDXF6_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDXF6_fit1.fit",
      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/log_pUmvNmS.txt",
      "software_version": "ATSAS 3.0.5 (r13837)",
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit2_model1_img.png",
          "software": "GASBOR",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "ATSAS 3.0.5 (r13837)",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDXF6_fit2_model1.pdb",
          "model_mw": null,
          "bead_radius": null,
          "log": "https://www.sasbdb.org/media/log_files/mbxP1g8.log",
          "symmetry": "P1",
          "comment": null,
          "user": 402
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit2_fixed_fit_img.png",
      "software": "GASBOR",
      "chi_square_value": 1.19,
      "p_value": 0.0,
      "fit_residual_plot": "SASDXF6_fit2_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDXF6_fit2.fir",
      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/mbxP1g8.log",
      "software_version": "ATSAS 3.0.5 (r13837)",
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDXF6_fit3_model1_img.png",
          "software": "AlphaFold",
          "pdb_link": [],
          "model_title": "SASDXF6_alfafold_fit",
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDXF6_fit3_model1.pdb",
          "model_mw": 99.64,
          "bead_radius": 1.9,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 402
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF6_fit3_fixed_fit_img.png",
      "software": "CRYSOL",
      "chi_square_value": 13.232,
      "p_value": 0.0,
      "fit_residual_plot": "SASDXF6_fit3_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDXF6_fit3.fit",
      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/SASDXF3_fit1_model1.log",
      "software_version": null,
      "description": ""
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": "1/cm",
  "experimental_mw": 104.85,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 95.98,
  "porod_mw_error": null,
  "pddf_i0": 0.0494,
  "pddf_i0_error": null,
  "guinier_i0": 0.049073,
  "guinier_i0_error": null,
  "pddf_rg": 3.903,
  "pddf_rg_error": null,
  "guinier_rg": 3.803,
  "guinier_rg_error": 0.01,
  "pddf_dmax": 13.36,
  "pddf_dmax_error": null,
  "porod_volume": 153.56,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 41,
  "guinier_point_last": 123,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDXF6_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2026-03-02T17:17:55.978050+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
  "code": "SASDXF6",
  "status": "success",
  "started_at": "2026-08-11T13:59:34.827346+00:00",
  "finished_at": "2026-08-11T13:59:50.257978+00:00",
  "source_last_modified": "2026-03-02T17:17:55.978050+01:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDXF6/",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/summary.json",
      "size": 10761,
      "sha256": "9570e6e80a1b254d6489704d65398b6785135e20c36130837ba3fc1c7033f8f5"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDXF6.dat",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.dat",
      "size": 120959,
      "sha256": "fe2ab71a537a48fed1b621d4781092137962cd9c6519e58f27a20d52dfa9c50c",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDXF6.out",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.out",
      "size": 185648,
      "sha256": "3422fdcd376b11dcbc1b3020a76aae0f93f0848262d6d5be8150ce1b63ce3fa0",
      "role": "pddf"
    },
    {
      "status": "not_available",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDXF6.sascif",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.sascif",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDXF6.zip",
      "path": "/data/saxsdb/sasbdb/entries/f6/sasdxf6/source/SASDXF6.zip",
      "size": 453199,
      "sha256": "f1fc752fd20437750558a7a0137a886e740eb0dc3cd13cbbb02e11f547364628",
      "role": "full_entry_zip",
      "zip_member_count": 8,
      "zip_validation": "central_directory_readable"
    }
  ]
}