查看完整 summary.json 原文
{
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"type_of_curve": "Single concentration",
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"title": "Dynamics and structural features of the eEF1A1 and eEF1A2 paralogs",
"publication": {
"title": "Dynamics and structural features of the eEF1A1 and eEF1A2 paralogs",
"author_list": "Novosylna O, Shalak V, Dąbrowska K, Patmanidis I, Lozhko D, Bondarchuk T, Schiøtt B, Pedersen J, Knudsen C, Nissen P, Dadlez M, Negrutskii B",
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"doi": "10.1093/nar/gkaf1177",
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"published_date": "2025 Nov 13"
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}
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"last_modified": "2025-11-15T14:55:01.726527+01:00",
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}
查看完整 manifest.json 原文
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