SASDXK2

Enabled/vasodilator-stimulated phosphoprotein homology 1 domain (EVH1) from Mus musculus Homer1

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2025-11-26T14:17:40.425313+01:00

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Enabled/vasodilator-stimulated phosphoprotein homology 1 domain (EVH1) from Mus musculus Homer1

浓度— – 2.0 缓冲液 / pH20mM NaCl, 50 mM NaPi, 0.02% of sodium-azide / 7.4
实验温度25.0 设备 / 束线CEITEC / Rigaku BioSAXS-2000
波长0.154 nm曝光600.0 s × 6

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
EVH1 domain of Homer protein homolog 1 from mouse
查看序列
GSHMGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQ
proteinMus musculusQ9Z2Y31–118monomer分子数 113.736 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1595[3]0.009193–0.499699 1/A含误差列缺失 014sasbdb/entries/k2/sasdxk2/source/SASDXK2.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)5.25Å
i0Guinier0.318152arbitrary
i0P(r)0.3191arbitrary
mwExperimental10.4kDa
mwPorod14.625kDa
porod_volumePorod23.4ų
rgGuinier1.5810.169Å
rgP(r)1.6Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20mM NaCl, 50 mM NaPi, 0.02% of sodium-azide缓冲液浓度
pH7.4添加剂
缓冲液说明
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2023-11-09储存 / 测量温度4.0 / 25.0
曝光时间600.0帧数6
波长0.154样品-探测器距离0.48
光源X-ray in house探测器Rigaku HyPix-3000
机构 / 束线CEITEC / Rigaku BioSAXS-2000 · Brno, Czech Republic
q 范围0.092 – 4.997样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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sascifsasbdb/entries/k2/sasdxk2/source/SASDXK2.sascifnot_available下载查看原文件源站
summarysasbdb/entries/k2/sasdxk2/source/summary.jsondownloaded696268855491de4e3845fef68a2b51e1ef3cfe2e8e5ce534273bc4d693fcde7f7c85下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:156 个字段值
字段路径原始值
codeSASDXK2
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleStructural Modeling and Dynamics of the Full-Length Homer1 Multimer.
project.publication.titleStructural Modeling and Dynamics of the Full-Length Homer1 Multimer.
project.publication.author_listKálmán ZE, Czajlik A, Maruzs B, Farkas F, Pap I, Homonnay C, Klumpler T, Batta G, Gáspári Z, Péterfia B
project.publication.journalProteins
project.publication.doi10.1002/prot.70091
project.publication.pmid41267651
project.publication.published_date2025 Nov 21
project.statusreleased
project.submitted_date2025-03-20
project.released_date2025-11-26
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intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXK2_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXK2_kratky_img.png
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experiment.instrument.detector.typeHybrid Photon Counting (HPC) X-ray detector
experiment.instrument.detector.nameRigaku HyPix-3000
experiment.instrument.detector.resolution100.0
experiment.instrument.nameCEITEC
experiment.instrument.cityBrno
experiment.instrument.countryCzech Republic
experiment.instrument.beamline_nameRigaku BioSAXS-2000
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray in house
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameEVH1 domain of Homer protein homolog 1 from mouse
experiment.sample.molecule[0].short_nameEVH1 of Homer1
experiment.sample.molecule[0].sequenceGSHMGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQ
experiment.sample.molecule[0].organismMus musculus
experiment.sample.molecule[0].uniprot_codeQ9Z2Y3
experiment.sample.molecule[0].uniprot_range_first1
experiment.sample.molecule[0].uniprot_range_last118
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK MELTSTPSQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFPHSAGDR TQALSHASSAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKR VTELECVSSQANAVHSHKTELNQTVQELEETLKVKEEEIERLKQEIDNARELQEQRDSLT QKLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRSNLKTLLEILDGKIFELTELRDNLA KLLECS
experiment.sample.molecule[0].mw13.736
experiment.sample.molecule[0].total_mw13.736
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.buffer.name20mM NaCl, 50 mM NaPi, 0.02% of sodium-azide
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameEnabled/vasodilator-stimulated phosphoprotein homology 1 domain (EVH1) from Mus musculus Homer1
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameCEITEC - Central European Institute of Technology, Masaryk University
experiment.contributor[0].affiliation[0].webpagehttps://www.ceitec.eu/
experiment.contributor[0].contributor_nameTomas
experiment.contributor[0].contributor_surnameKlumpler
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2023-11-09
experiment.storage_temperature4.0
experiment.cell_temperature25.0
experiment.exposure_time600.0
experiment.number_of_frames6
experiment.wavelength0.154
experiment.sample_detector_distance0.48
experiment.concentration_minnull
experiment.concentration_max2.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.092
experiment.s_max4.997
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDXK2_fit1_model1_img.png
fits[0].models[0].softwareXPLOR-NIH
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
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fits[0].models[0].bead_radiusnull
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fits[0].models[0].commentnull
fits[0].models[0].user195
fits[0].fit_unit1/A
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fits[0].softwarePepsi-SAXS
fits[0].chi_square_value1.075
fits[0].p_value0.689
fits[0].fit_residual_plotSASDXK2_fit1_fitresiduals_img.png
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fits[0].software_version3.0
fits[0].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw10.4
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw14.625
porod_mw_errornull
pddf_i00.3191
pddf_i0_errornull
guinier_i00.318152
guinier_i0_errornull
pddf_rg1.6
pddf_rg_errornull
guinier_rg1.581
guinier_rg_error0.169
pddf_dmax5.25
pddf_dmax_errornull
porod_volume23.4
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last89
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDXK2_datloglog_img.png
symmetrynull
last_modified2025-11-26T14:17:40.425313+01:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDXK2
statussuccess
started_at2026-08-11T13:40:41.825605+00:00
finished_at2026-08-11T13:40:50.258079+00:00
source_last_modified2025-11-26T14:17:40.425313+01:00
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查看完整 summary.json 原文
{
  "code": "SASDXK2",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Structural Modeling and Dynamics of the Full-Length Homer1 Multimer.",
    "publication": {
      "title": "Structural Modeling and Dynamics of the Full-Length Homer1 Multimer.",
      "author_list": "Kálmán ZE, Czajlik A, Maruzs B, Farkas F, Pap I, Homonnay C, Klumpler T, Batta G, Gáspári Z, Péterfia B",
      "journal": "Proteins",
      "doi": "10.1002/prot.70091",
      "pmid": "41267651",
      "published_date": "2025 Nov 21"
    },
    "status": "released",
    "submitted_date": "2025-03-20",
    "released_date": "2025-11-26"
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      },
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查看完整 manifest.json 原文
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