查看完整 summary.json 原文
{
"code": "SASDXQ4",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/nm",
"project": {
"title": "Structural and biophysical insights into RomR, MglB and MglC interactions involved in regulating cell polarity in Myxococcus xanthus",
"publication": {
"title": "Structural and biophysical insights into RomR, MglB and MglC interactions involved in regulating cell polarity in Myxococcus xanthus",
"author_list": "Kodesia A, Kapoor S, Thakur K",
"journal": "Journal of Biological Chemistry",
"doi": "10.1016/j.jbc.2025.110907",
"pmid": null,
"published_date": "2025 Nov"
},
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"submitted_date": "2025-05-18",
"released_date": "2025-11-07"
},
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{
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"organism": "Myxococcus xanthus",
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"oligomerization": "trimer",
"molecular_type": "protein",
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}
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"name": "C-terminal helix of RomR protein from Myxococcus xanthus",
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"contributor": [
{
"affiliation": [
{
"short_name": "CSIR",
"address": "Chandigarh, India",
"full_name": "CSIR-Institute of Microbial Technology",
"webpage": "http://www.imtech.res.in/"
}
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"contributor_name": "Akriti",
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"orcid": ""
}
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"date": "2023-03-31",
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"cell_temperature": 4.0,
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"symmetry": null,
"last_modified": "2025-11-12T11:19:22.068107+01:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
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