查看完整 summary.json 原文
{
"code": "SASDXU3",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "DNA induces non-canonical dimerization of the farnesoid X receptor.",
"publication": {
"title": "DNA induces non-canonical dimerization of the farnesoid X receptor.",
"author_list": "Khan SH, Yennawar N, Okafor CD",
"journal": "Nucleic Acids Res",
"doi": "10.1093/nar/gkag087",
"pmid": "41728955",
"published_date": "2026 Feb 5"
},
"status": "released",
"submitted_date": "2025-04-16",
"released_date": "2026-02-26"
},
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"experiment": {
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"name": "Rigaku HyPix-3000",
"resolution": 100.0
},
"name": "Pennsylvania State University",
"city": "University Park, PA",
"country": "USA",
"beamline_name": "Rigaku BioSAXS-2000",
"beam_geometry": null,
"type_of_source": "X-ray in house",
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"molecule": [
{
"long_name": "Isoform 3 of Bile acid receptor",
"short_name": "FXR",
"sequence": "KKPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTTKSCREKTELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFT",
"organism": "Homo sapiens",
"uniprot_code": "Q96RI1",
"uniprot_range_first": 110,
"uniprot_range_last": 466,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MGSKMNLIEHSHLPTTDEFSFSENLFGVLTEQVAGPLGQNLEVEPYSQYSNVQFPQVQPQ\nISSSSYYSNLGFYPQQPEEWYSPGIYELRRMPAETLYQGETEVAEMPVTKKPRMGASAGR\nIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQ\nECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTVNEDSEGRDLRQVTSTT\nKSCREKTELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQ\nVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSG\nISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQ\nKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ",
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"total_mw": 41.264,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
"name": "50 mM HEPES, 150 mM NaCl, 5 % glycerol, 1 mM DTT, 20 µM CDCA",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.4,
"deuteration": null
},
"purity_method": null,
"name": "Farnesoid X Receptor Protein",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "PSU",
"address": "Pennsylvania, USA",
"full_name": "Pennsylvania State University (PSU)",
"webpage": "https://www.psu.edu/"
}
],
"contributor_name": "Neela",
"contributor_surname": "Yennawar",
"orcid": ""
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2024-05-09",
"storage_temperature": 4.0,
"cell_temperature": 4.0,
"exposure_time": 600.0,
"number_of_frames": 6,
"wavelength": 0.154,
"sample_detector_distance": 4.955,
"concentration_min": null,
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"sample_volume": null,
"flow_rate": null,
"s_min": 0.034,
"s_max": 6.106,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
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{
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"software": "AlphaFold",
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"model_title": null,
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"comment": null,
"user": 1001
}
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"fit_unit": "1/A",
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"software": "FoXS",
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"p_value": 0.0,
"fit_residual_plot": "SASDXU3_fit1_fitresiduals_img.png",
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"i0_calibration_standard": null,
"description": "Chenodeoxycholic acid (CDCA): https://www.ebi.ac.uk/chembl/explore/compound/CHEMBL240597",
"experiment_description": "SAXS data from solutions of farnesoid X receptor protein in 50 mM HEPES, 150 mM NaCl, 5 % glycerol, 1 mM DTT, 20 µM CDCA, pH 7.4 were collected on a Rigaku BioSAXS-2000 instrument (Pennsylvania State University, University Park, PA, USA) using a Rigaku HyPix-3000 detector at a sample-detector distance of 5.0 m and at a wavelength of λ = 0.154 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 0.50 mg/ml was measured at 4°C. Six successive 600 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
"intensity_unit": "arbitrary",
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"porod_mw": 47.0,
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"pddf_i0": 1.818,
"pddf_i0_error": null,
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"pddf_rg": 3.47,
"pddf_rg_error": null,
"guinier_rg": 3.452,
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"pddf_dmax": 11.6,
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"porod_volume": 75.25,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 13,
"guinier_point_last": 43,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDXU3_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-02-26T13:30:45.147085+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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