查看完整 summary.json 原文
{
"code": "SASDXX4",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/A",
"project": {
"title": "Structural, biophysical and biochemical studies of CAZYmes involved in exopolysaccharides degradation of microbial biofilms",
"publication": {
"title": "Structural, biophysical and biochemical studies of CAZYmes involved in exopolysaccharides degradation of microbial biofilms",
"author_list": "Amanda Freitas Cruz",
"journal": "Universidade de São Paulo",
"doi": null,
"pmid": null,
"published_date": "2025 Sep 18"
},
"status": "released",
"submitted_date": "2025-05-24",
"released_date": "2025-11-24"
},
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},
"name": "Stanford Synchrotron Radiation Lightsource (SSRL)",
"city": "Menlo Park, CA",
"country": "USA",
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"type_of_source": "X-ray synchrotron",
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{
"long_name": "Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB",
"short_name": "Serratia marcescens",
"sequence": "CSQADVPRFTPPAERPVGPMERPWPANRYAVLAYHDVEDGAADQRYMSVRTSALNEQFAWLKQNGYQPVSVEQILQAQNGGPALPNKAVLLTFDDGYRSFYSRVFPLLKAYNWPAVLAPVGVWLDAPADKPVDFGGLMTPRDRFLTWQQVREVSDSGLVEIGAHTYASHYGGIANPQGNTEPAVANRLYDAKQGRYESEAEYRQRIEKDVALITQRITAATGKAPRVWVWPYGAAGGVALDIARKHGYRMALTLENGLADVNAPENVPRMLVAGNPSLTSFAQQLTQIQNRQIMRVAHVDLDYLYDPDPQQQAKNLDKLIQRIYDLRINTVFLQAFADPKGDGNVRELYFPNRWLPMKADLFNRVSWQLSSRTGVAVYAWMPVLAFELGSDVPRVQRLDPQNGQLSVDDKQYRRLSPFSPVARQRIGEIYEDLAAHATFKGILFHDDALLSDFEDAGPDAAAAYRQAGFADSVAAIRQDPQAMARWTRFKSRALIEFTQSLTERVRAIRGPQVQTARNIYAMPVLDPASEAWFGQNLADFLQAYDWVAPMAMPLMENVPRADSGRWLDQLVGKVAAYPGALDKTVFELQAVDWRKERRISLDDGQLLAEWMRRLQRNGAQSFGYYPDNFLDDRPKLDAVRPVLSSAWFPLP",
"organism": "Serratia marcescens",
"uniprot_code": "A0A2V4FWX5",
"uniprot_range_first": 18,
"uniprot_range_last": 668,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MLIRSSLFVLAALLTTGCSQADVPRFTPPAERPVGPMERPWPANRYAVLAYHDVEDGAAD\nQRYMSVRTSALNEQFAWLKQNGYQPVSVEQILQAQNGGPALPNKAVLLTFDDGYRSFYSR\nVFPLLKAYNWPAVLAPVGVWLDAPADKPVDFGGLMTPRDRFLTWQQVREVSDSGLVEIGA\nHTYASHYGGIANPQGNTEPAVANRLYDAKQGRYESEAEYRQRIEKDVALITQRITAATGK\nAPRVWVWPYGAAGGVALDIARKHGYRMALTLENGLADVNAPENVPRMLVAGNPSLTSFAQ\nQLTQIQNRQIMRVAHVDLDYLYDPDPQQQAKNLDKLIQRIYDLRINTVFLQAFADPKGDG\nNVRELYFPNRWLPMKADLFNRVSWQLSSRTGVAVYAWMPVLAFELGSDVPRVQRLDPQNG\nQLSVDDKQYRRLSPFSPVARQRIGEIYEDLAAHATFKGILFHDDALLSDFEDAGPDAAAA\nYRQAGFADSVAAIRQDPQAMARWTRFKSRALIEFTQSLTERVRAIRGPQVQTARNIYAMP\nVLDPASEAWFGQNLADFLQAYDWVAPMAMPLMENVPRADSGRWLDQLVGKVAAYPGALDK\nTVFELQAVDWRKERRISLDDGQLLAEWMRRLQRNGAQSFGYYPDNFLDDRPKLDAVRPVL\nSSAWFPLP",
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"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB"
}
],
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"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.4,
"deuteration": null
},
"purity_method": null,
"name": "Serratia marcescens poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "São Paulo, SP, Brazil",
"full_name": "Instituto de Física, Universidade de São Paulo",
"webpage": ""
}
],
"contributor_name": "Amanda",
"contributor_surname": "Freitas Cruz",
"orcid": ""
}
],
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"date": "2025-02-03",
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"cell_temperature": 20.0,
"exposure_time": 0.1,
"number_of_frames": 4,
"wavelength": 0.1127,
"sample_detector_distance": 1.7,
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},
"fits": [
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"comment": null,
"user": 1234
}
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"fit_unit": "1/A",
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"software": "CRYSOL",
"chi_square_value": 4.912,
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"fit_residual_plot": "SASDXX4_fit1_fitresiduals_img.png",
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"description": null,
"experiment_description": "Synchrotron SAXS data from solutions of PgaB in phosphate-buffered saline, pH 7.4 were collected on the BL4-2 beam line at the Stanford Synchrotron Radiation Lightsource (SSRL; Menlo Park, CA, USA) using a Pilatus3 X 1M detector at a sample-detector distance of 1.7 m and at a wavelength of λ = 0.1127 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 0.05 μl sample at 8 mg/ml was injected at a 0.05 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 20°C. Four successive 0.100 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
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"guinier_point_first": 30,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDXX4_datloglog_img.png",
"symmetry": null,
"last_modified": "2025-11-24T10:26:41.769576+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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