SASDYD4

RNA component of mitochondrial RNA processing endoribonuclease (RMRP in 5 mM Mg2+)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:SEC-SAS 最后更新:2026-02-24T13:37:53.223478+01:00

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · RNA component of mitochondrial RNA processing endoribonuclease (RMRP in 5 mM Mg2+)

浓度— – 1.0 缓冲液 / pH10 mM Bis-Tris, 100 mM NaCl, 5 mM MgCl2 / 6.5
Experimental temperature25.0 设备 / 束线Diamond Light Source / B21
波长0.094 nm曝光3.0 s × 600

分子组分

组分类型 / OrganismUniProt 与Construct寡聚状态Molecular weight
RMRP
查看序列
GGUUCGUGCUGAAGGCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGAAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCUCAUUCUCAGCGCGGCUGUUCUAGAAAAAAAAA
RNAHomo sapiens—–—monomer分子数 190.0 kDa

实验曲线

曲线点数 / 列q range误差质量负强度点来源文件
12433[3]0.006584666–0.4398219 1/A含误差列缺失 0339sasbdb/entries/d4/sasdyd4/source/SASDYD4.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)23.0Å
i0Guinier0.0684931/cm
i0P(r)0.066621/cm
mwExperimental108.0kDa
mwPorod197.0kDa
porod_volumePorod316.0ų
rgGuinier7.110.776Å
rgP(r)7.09Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

拟合 2 · DAMMIN

χ²:1.353CorMap p:0.0294单位:1/A
模型名称 / 类型软件Symmetry模型 MWPDB 声明来源文件
1dummyDAMMIN SUPCOMB 23 (r9678)模型 图片

拟合 3 · DAMMIN

χ²:1.355CorMap p:0.2131单位:1/A
模型名称 / 类型软件Symmetry模型 MWPDB 声明来源文件
1dummyDAMMIN SUPCOMB 23 (r9678)模型 图片

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称10 mM Bis-Tris, 100 mM NaCl, 5 mM MgCl2缓冲液浓度
pH6.5添加剂
缓冲液说明
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2022-03-01储存 / 测量温度4.0 / 25.0
曝光时间3.0帧数600
波长0.094样品-探测器距离3.7
光源X-ray synchrotron探测器Eiger 4M
机构 / 束线Diamond Light Source / B21 · Didcot, UK
q range0.066 – 4.398样品体积 / 流速52.0 / 0.16

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可Download文件

类别文件状态大小校验值Download与查看
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pddfsasbdb/entries/d4/sasdyd4/source/SASDYD4.outdownloaded1607953e51e2da43d9e929af69a763c80b88f2973e6caa2b90dd424cebf51a7ed8ec86Download查看原文件源站
sascifsasbdb/entries/d4/sasdyd4/source/SASDYD4.sascifnot_availableDownload查看原文件源站
summarysasbdb/entries/d4/sasdyd4/source/summary.jsondownloaded8575ad71ecfd1835ac358e78552464d76d38feed394764e985064e13a8f41aceb1c8Download查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(8 项)
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pddf:来源记录
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sascif:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:202 个字段值
字段路径原始值
codeSASDYD4
statusPublished
type_of_curveSEC-SAS
angular_unit1/A
project.titleHuman lncRNA RMRP interacts with DEAD-box helicases and modulates mitochondrial function.
project.publication.titleHuman lncRNA RMRP interacts with DEAD-box helicases and modulates mitochondrial function.
project.publication.author_listPereira HS, Luddu J, Veerareddygari GR, Sanghvi SK, Patel PB, Robinson ZE, Siddiqui MQ, Singh H, Patel TR
project.publication.journalProc Natl Acad Sci U S A
project.publication.doi10.1073/pnas.2522583123
project.publication.pmid41719330
project.publication.published_date2026 Feb 24
project.statusreleased
project.submitted_date2025-12-19
project.released_date2026-02-24
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experiment.instrument.detector.resolution75.0
experiment.instrument.nameDiamond Light Source
experiment.instrument.cityDidcot
experiment.instrument.countryUK
experiment.instrument.beamline_nameB21
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameRMRP
experiment.sample.molecule[0].short_nameRMRP
experiment.sample.molecule[0].sequenceGGUUCGUGCUGAAGGCCUGUAUCCUAGGCUACACACUGAGGACUCUGUUCCUCCCCUUUCCGCCUAGGGGAAAGUCCCCGGACCUCGGGCAGAGAGUGCCACGUGCAUACGCACGUAGACAUUCCCCGCUUCCCACUCCAAAGUCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGUGGCGCGGGGGCGUCAUCCGUCAGCUCCCUCUAGUUACGCAGGCAGUGCGUGUCCGCGCACCAACCACACGGGGCUCAUUCUCAGCGCGGCUGUUCUAGAAAAAAAAA
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codenull
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experiment.sample.molecule[0].uniprot_range_lastnull
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experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
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experiment.sample.molecule[0].molecule_description
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experiment.contributor[0].affiliation[0].short_namenull
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experiment.contributor[0].affiliation[0].full_nameUniversity of Lethbridge
experiment.contributor[0].affiliation[0].webpagehttp://www.uleth.ca/
experiment.contributor[0].contributor_nameTrushar
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experiment.storage_temperature4.0
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experiment.total_exposure_timenull
experiment.seccolumn19
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tags[]
intensity_unit1/cm
experimental_mw108.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
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estimated_volumenull
estimated_volume_errornull
guinier_point_first31
guinier_point_last61
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDYD4_datloglog_img.png
symmetrynull
last_modified2026-02-24T13:37:53.223478+01:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDYD4
statussuccess
started_at2026-08-11T14:21:15.594138+00:00
finished_at2026-08-11T14:21:27.639839+00:00
source_last_modified2026-02-24T13:37:53.223478+01:00
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查看完整 summary.json 原文
{
  "code": "SASDYD4",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "Human lncRNA RMRP interacts with DEAD-box helicases and modulates mitochondrial function.",
    "publication": {
      "title": "Human lncRNA RMRP interacts with DEAD-box helicases and modulates mitochondrial function.",
      "author_list": "Pereira HS, Luddu J, Veerareddygari GR, Sanghvi SK, Patel PB, Robinson ZE, Siddiqui MQ, Singh H, Patel TR",
      "journal": "Proc Natl Acad Sci U S A",
      "doi": "10.1073/pnas.2522583123",
      "pmid": "41719330",
      "published_date": "2026 Feb 24"
    },
    "status": "released",
    "submitted_date": "2025-12-19",
    "released_date": "2026-02-24"
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查看完整 manifest.json 原文
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