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SASDYD7

Ferric anguibactin-binding protein in complex with the ferric-petrobactin (FePB-FatB)

数据类型：SASBDB 实验数据 状态：Published 曲线类型：Single concentration 最后更新：2026-04-24T10:30:31.467748+02:00

SAXS data of FePB-FatB were collected at two sample-to-detector distances (3 m and 1 m). The 3 m setting covered the low-q region (q ≈ 0.025 to 0.126 Å-1), and the 1 m setting covered the higher-q region (q ≈ 0.126 to 0.60 Å-1). The datasets were scaled and checked for agreement in the overlap region before merging into a single profile.

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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Ferric anguibactin-binding protein in complex with the ferric-petrobactin (FePB-FatB)

浓度— – 3.0 缓冲液 / pH20mM Tris-HCl, 100 mM NaCl / 8.0
Experimental temperature4.0 设备 / 束线Pohang Accelerator Laboratory / 4C
波长0.0734 nm曝光10.0 s × 50

分子组分

组分类型 / OrganismUniProt 与Construct寡聚状态Molecular weight
Ferric anguibactin-binding protein
查看序列
SDKPKTVEITDAHGTVKVPVNPKNVVALDNRTFETLSDWGIKLAAAPKDIMPADSAYKKDEKVQNIGNHREPNLEIIAAANPELVIVGQRFADHYEEIKKLVPNAAVIDLNFDVSEKATKPGENLVKGLKDSTVTLGKIFNKDKEAKQLVADFDKSIEKAKSAYNGKDKVMSVIVTGGNIGFAAPHSGRVWGPMYEIFGWTPALEVSNSTAGHKGDDVSVEAIAQTNPDWIFVLDRDAATSDAAKSTPAKDVISKSPALQNTTAVSKKQVIYAPEDTYTNESIQTYIELFGNMAKTLAK
proteinBacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)Q815N540–338monomer分子数 132.425 kDa

实验曲线

曲线点数 / 列q range误差质量负强度点来源文件
11171[3]0.02504625–0.6001851 1/A含误差列缺失 00sasbdb/entries/d7/sasdyd7/source/SASDYD7.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)7.07—Å
i0Guinier73.3492—arbitrary
i0P(r)73.61—arbitrary
mwExperimental33.1—kDa
mwPorod35.0—kDa
porod_volumePorod56.0—ų
rgGuinier2.110.045Å
rgP(r)2.13—Å

这些数值是 SASBDB 来源记录，不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”；Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20mM Tris-HCl, 100 mM NaCl缓冲液浓度—
pH8.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2025-04-07储存 / 测量温度4.0 / 4.0
曝光时间10.0帧数50
波长0.0734样品-探测器距离3.0
光源X-ray synchrotron探测器Dectris / EIGER2 X 4M
机构 / 束线Pohang Accelerator Laboratory / 4C · Pohang, South Korea
q range0.25 – 6.002样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可Download文件

类别文件状态大小校验值Download与查看
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sascifsasbdb/entries/d7/sasdyd7/source/SASDYD7.sascifnot_available——Download查看原文件源站
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curve：来源记录
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full_entry_zip：来源记录与 ZIP 内部目录（2 项）
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pddf：来源记录
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sascif：来源记录
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summary：来源记录
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全部来源字段（无筛选）

这里自动展开来源记录中的每一个字段，包括空值、列表成员和页面上方已展示过的字段。

summary.json：128 个字段值
字段路径原始值
codeSASDYD7
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleStructural basis of FatB-mediated iron uptake via tyrosine/histidine direct coordination accompanying long-distance domain reorganization.
project.publication.titleStructural basis of FatB-mediated iron uptake via tyrosine/histidine direct coordination accompanying long-distance domain reorganization.
project.publication.author_listLee H, Kim SO, You S, Segalina A, Noh T, Ihee H
project.publication.journalNat Commun
project.publication.doi10.1038/s41467-026-72127-y
project.publication.pmid42000734
project.publication.published_date2026 Apr 18
project.statusreleased
project.submitted_date2026-02-19
project.released_date2026-04-02
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDYD7.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDYD7.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYD7_dat_img.png
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sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDYD7.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.nameDectris / EIGER2 X 4M
experiment.instrument.detector.resolution0.075
experiment.instrument.namePohang Accelerator Laboratory
experiment.instrument.cityPohang
experiment.instrument.countrySouth Korea
experiment.instrument.beamline_name4C
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameFerric anguibactin-binding protein
experiment.sample.molecule[0].short_nameFatB
experiment.sample.molecule[0].sequenceSDKPKTVEITDAHGTVKVPVNPKNVVALDNRTFETLSDWGIKLAAAPKDIMPADSAYKKDEKVQNIGNHREPNLEIIAAANPELVIVGQRFADHYEEIKKLVPNAAVIDLNFDVSEKATKPGENLVKGLKDSTVTLGKIFNKDKEAKQLVADFDKSIEKAKSAYNGKDKVMSVIVTGGNIGFAAPHSGRVWGPMYEIFGWTPALEVSNSTAGHKGDDVSVEAIAQTNPDWIFVLDRDAATSDAAKSTPAKDVISKSPALQNTTAVSKKQVIYAPEDTYTNESIQTYIELFGNMAKTLAK
experiment.sample.molecule[0].organismBacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
experiment.sample.molecule[0].uniprot_codeQ815N5
experiment.sample.molecule[0].uniprot_range_first40
experiment.sample.molecule[0].uniprot_range_last338
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMKKSMLLKLVSILAVFTLMLVACSDSSKETSKANNKDNGSDKPKTVEITDAHGTVKVPVN PKNVVALDNRTFETLSDWGIKLAAAPKDIMPADSAYKKDEKVQNIGNHREPNLEIIAAAN PELVIVGQRFADHYEEIKKLVPNAAVIDLNFDVSEKATKPGENLVKGLKDSTVTLGKIFN KDKEAKQLVADFDKSIEKAKSAYNGKDKVMSVIVTGGNIGFAAPHSGRVWGPMYEIFGWT PALEVSNSTAGHKGDDVSVEAIAQTNPDWIFVLDRDAATSDAAKSTPAKDVISKSPALQN TTAVSKKQVIYAPEDTYTNESIQTYIELFGNMAKTLAK
experiment.sample.molecule[0].mw32.425
experiment.sample.molecule[0].total_mw32.425
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionFatB in complex with the ferric-petrobactin (FePB) complex.
experiment.sample.buffer.name20mM Tris-HCl, 100 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph8.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameFerric anguibactin-binding protein in complex with the ferric-petrobactin (FePB-FatB)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[]
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2025-04-07
experiment.storage_temperature4.0
experiment.cell_temperature4.0
experiment.exposure_time10.0
experiment.number_of_frames50
experiment.wavelength0.0734
experiment.sample_detector_distance3.0
experiment.concentration_minnull
experiment.concentration_max3.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.25
experiment.s_max6.002
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionSAXS data of FePB-FatB were collected at two sample-to-detector distances (3 m and 1 m). The 3 m setting covered the low-q region (q ≈ 0.025 to 0.126 Å-1), and the 1 m setting covered the higher-q region (q ≈ 0.126 to 0.60 Å-1). The datasets were scaled and checked for agreement in the overlap region before merging into a single profile.
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw33.1
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw35.0
porod_mw_errornull
pddf_i073.61
pddf_i0_errornull
guinier_i073.3492
guinier_i0_errornull
pddf_rg2.13
pddf_rg_errornull
guinier_rg2.11
guinier_rg_error0.045
pddf_dmax7.07
pddf_dmax_errornull
porod_volume56.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first4
guinier_point_last137
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDYD7_datloglog_img.png
symmetrynull
last_modified2026-04-24T10:30:31.467748+02:00
bragg_peak[]
manifest.json：34 个字段值
字段路径原始值
codeSASDYD7
statussuccess
started_at2026-08-11T15:27:45.767340+00:00
finished_at2026-08-11T15:27:54.344880+00:00
source_last_modified2026-04-24T10:30:31.467748+02:00
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查看完整 summary.json 原文
{
  "code": "SASDYD7",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Structural basis of FatB-mediated iron uptake via tyrosine/histidine direct coordination accompanying long-distance domain reorganization.",
    "publication": {
      "title": "Structural basis of FatB-mediated iron uptake via tyrosine/histidine direct coordination accompanying long-distance domain reorganization.",
      "author_list": "Lee H, Kim SO, You S, Segalina A, Noh T, Ihee H",
      "journal": "Nat Commun",
      "doi": "10.1038/s41467-026-72127-y",
      "pmid": "42000734",
      "published_date": "2026 Apr 18"
    },
    "status": "released",
    "submitted_date": "2026-02-19",
    "released_date": "2026-04-02"
  },
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      "country": "South Korea",
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    },
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          "long_name": "Ferric anguibactin-binding protein",
          "short_name": "FatB",
          "sequence": "SDKPKTVEITDAHGTVKVPVNPKNVVALDNRTFETLSDWGIKLAAAPKDIMPADSAYKKDEKVQNIGNHREPNLEIIAAANPELVIVGQRFADHYEEIKKLVPNAAVIDLNFDVSEKATKPGENLVKGLKDSTVTLGKIFNKDKEAKQLVADFDKSIEKAKSAYNGKDKVMSVIVTGGNIGFAAPHSGRVWGPMYEIFGWTPALEVSNSTAGHKGDDVSVEAIAQTNPDWIFVLDRDAATSDAAKSTPAKDVISKSPALQNTTAVSKKQVIYAPEDTYTNESIQTYIELFGNMAKTLAK",
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          "molecular_type": "protein",
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          "complex_state": false,
          "deuteration": null,
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          "molecule_description": "FatB in complex with the ferric-petrobactin (FePB) complex."
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        "comment": null,
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        "pka": null,
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        "deuteration": null
      },
      "purity_method": null,
      "name": "Ferric anguibactin-binding protein  in complex with the ferric-petrobactin (FePB-FatB)",
      "ext_coefficient": null,
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  "description": "SAXS data of FePB-FatB were collected at two sample-to-detector distances (3 m and 1 m). The 3 m setting covered the low-q region (q ≈ 0.025 to 0.126 Å-1), and the 1 m setting covered the higher-q region (q ≈ 0.126 to 0.60 Å-1). The datasets were scaled and checked for agreement in the overlap region before merging into a single profile.",
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  "guinier_i0_error": null,
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  "guinier_rg_error": 0.045,
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  "estimated_volume_error": null,
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  "guinier_point_last": 137,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDYD7_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2026-04-24T10:30:31.467748+02:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
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