full_entry_zip:来源记录与 ZIP 内部目录(8 项)
{
"path": "/data/saxsdb/sasbdb/entries/h2/sasdyh2/source/SASDYH2.zip",
"role": "full_entry_zip",
"sha256": "beee7b5ea99d5a97bc9c7eaa084d318775a5d9ae219767b16f33cc08aa8f8792",
"size": 1065782,
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDYH2.zip",
"zip_member_count": 8,
"zip_members": [
{
"crc32": "be659e07",
"name": "SASDYH2/experimental_data/SASDYH2.dat",
"size": 37603
},
{
"crc32": "8c6e9575",
"name": "SASDYH2/pddf/SASDYH2.out",
"size": 12513
},
{
"crc32": "f4cf7f50",
"name": "SASDYH2/SASDYH2_fit1.fir",
"size": 21772
},
{
"crc32": "d59ef8cb",
"name": "SASDYH2/SASDYH2_fit1_model1.cif",
"size": 52911
},
{
"crc32": "6ed4b21b",
"name": "SASDYH2/SASDYH2_fit1_model2.pdb",
"size": 154144
},
{
"crc32": "6a439f66",
"name": "SASDYH2/SASDYH2_fit2.fit",
"size": 44885
},
{
"crc32": "58a98683",
"name": "SASDYH2/SASDYH2_fit2_model1.mrc",
"size": 1049600
},
{
"crc32": "9d9d9cf1",
"name": "SASDYH2/SASDYH2_fit2_model2.pdb",
"size": 77031
}
],
"zip_validation": "central_directory_readable"
}查看完整 summary.json 原文
{
"code": "SASDYH2",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "RnaseA",
"publication": null,
"status": "released",
"submitted_date": "2025-11-05",
"released_date": "2025-11-12"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDYH2.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDYH2.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYH2_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYH2_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDYH2_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYH2_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDYH2.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus3 X 1M",
"resolution": 0.172
},
"name": "Stanford Synchrotron Radiation Lightsource (SSRL)",
"city": "Menlo Park, CA",
"country": "USA",
"beamline_name": "BL4-2",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Bovine Ribonuclease pancreatic",
"short_name": "RnaseA",
"sequence": "KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV",
"organism": "Bos taurus",
"uniprot_code": "P61823",
"uniprot_range_first": 27,
"uniprot_range_last": 150,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MALKSLVLLSLLVLVLLLVRVQPSLGKETAAAKFERQHMDSSTSAASSSNYCNQMMKSRN\nLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPN\nCAYKTTQANKHIIVACEGNPYVPVHFDASV",
"mw": 13.69,
"total_mw": 13.69,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "Sigma sources RnaseA from bovine pancreas"
}
],
"buffer": {
"name": "20 mM HEPES, 150 mM NaCl",
"concentration_unit": null,
"comment": "Extensively dialyzed",
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.4,
"deuteration": null
},
"purity_method": null,
"name": "RnaseA at pH 7.4",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "Topos Bio",
"webpage": null
}
],
"contributor_name": "Anthony",
"contributor_surname": "Giannetti",
"orcid": "https://orcid.org/0009-0003-4487-4826"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2025-07-09",
"storage_temperature": 15.0,
"cell_temperature": 15.0,
"exposure_time": 1.0,
"number_of_frames": 16,
"wavelength": 0.1127,
"sample_detector_distance": 1.2486,
"concentration_min": null,
"concentration_max": 10.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.103,
"s_max": 7.479,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDYH2_fit1_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDYH2_fit1_model1.cif",
"model_mw": null,
"bead_radius": null,
"log": null,
"symmetry": "P1",
"comment": null,
"user": 1289
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDYH2_fit1_fixed_fit_img.png",
"software": "DAMMIF",
"chi_square_value": 1.189,
"p_value": 0.2904,
"fit_residual_plot": "SASDYH2_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDYH2_fit1.fir",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/refine_GNOM_trun.log",
"software_version": null,
"description": ""
},
{
"models": [
{
"model_plot": null,
"software": "DENSS",
"pdb_link": [],
"model_title": null,
"type_of_model": "density",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDYH2_fit2_model1.mrc",
"model_mw": null,
"bead_radius": null,
"log": null,
"symmetry": "P1",
"comment": null,
"user": 1289
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDYH2_fit2_fixed_fit_img.png",
"software": "DENSS",
"chi_square_value": 2.0886,
"p_value": 0.0,
"fit_residual_plot": "SASDYH2_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDYH2_fit2.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/RNASEA_refine.log",
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": null,
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 10.7,
"experimental_mw_error": null,
"guinier_i0_mw": 15.7,
"guinier_i0_mw_error": null,
"porod_mw": 10.0,
"porod_mw_error": null,
"pddf_i0": 114.0,
"pddf_i0_error": 0.13,
"guinier_i0": 113.29,
"guinier_i0_error": null,
"pddf_rg": 1.571,
"pddf_rg_error": 0.003,
"guinier_rg": 1.551,
"guinier_rg_error": 0.024,
"pddf_dmax": 60.0,
"pddf_dmax_error": null,
"porod_volume": 16.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 23,
"guinier_point_last": 95,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDYH2_datloglog_img.png",
"symmetry": null,
"last_modified": "2025-11-12T05:07:57.150553+01:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
{
"code": "SASDYH2",
"status": "success",
"started_at": "2026-08-11T13:39:18.043343+00:00",
"finished_at": "2026-08-11T13:39:26.667712+00:00",
"source_last_modified": "2025-11-12T05:07:57.150553+01:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDYH2/",
"path": "/data/saxsdb/sasbdb/entries/h2/sasdyh2/source/summary.json",
"size": 7185,
"sha256": "a634f7d8c5191dd2502bc1ddc632ea9de15534c4a52e3ab61e09cc04f2e2bd77"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDYH2.dat",
"path": "/data/saxsdb/sasbdb/entries/h2/sasdyh2/source/SASDYH2.dat",
"size": 37603,
"sha256": "98b53e8f0de04cba63b522c1f5be93f733a5f0da7bc6b4c53cd8c60bee3872e9",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDYH2.out",
"path": "/data/saxsdb/sasbdb/entries/h2/sasdyh2/source/SASDYH2.out",
"size": 12513,
"sha256": "0ba9413068eb25a662a8265b9297ed873068dab4b8afa7e95fae9d3f9c68a9af",
"role": "pddf"
},
{
"status": "not_available",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDYH2.sascif",
"path": "/data/saxsdb/sasbdb/entries/h2/sasdyh2/source/SASDYH2.sascif",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDYH2.zip",
"path": "/data/saxsdb/sasbdb/entries/h2/sasdyh2/source/SASDYH2.zip",
"size": 1065782,
"sha256": "beee7b5ea99d5a97bc9c7eaa084d318775a5d9ae219767b16f33cc08aa8f8792",
"role": "full_entry_zip",
"zip_member_count": 8,
"zip_validation": "central_directory_readable"
}
]
}