SASDYJ2

Hen Egg White Lysozyme pH 7.4

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2025-11-12T08:45:15.794651+01:00

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Hen Egg White Lysozyme pH 7.4

浓度— – 16.0 缓冲液 / pH20 mM HEPES, 150 mM NaCl / 7.4
实验温度15.0 设备 / 束线Stanford Synchrotron Radiation Lightsource (SSRL) / BL4-2
波长0.1127 nm曝光1.0 s × 16

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Hen egg white lysozyme
查看序列
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
proteinGallus gallusP0069819–147monomer分子数 114.314 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1964[3]0.01025133–0.7479287 1/A含误差列缺失 05sasbdb/entries/j2/sasdyj2/source/SASDYJ2.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)59.0Å
i0Guinier125.838arbitrary
i0P(r)126.00.11arbitrary
mwExperimental10.9kDa
mwGuinier I(0)10.9kDa
mwPorod14.0kDa
porod_volumePorod23.0ų
rgGuinier1.5810.022Å
rgP(r)1.5980.003Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

拟合 2 · DENSS

χ²:4.2625CorMap p:0.0单位:1/A
模型名称 / 类型软件对称性模型 MWPDB 声明来源文件
1densityDENSS 模型

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM HEPES, 150 mM NaCl缓冲液浓度
pH7.4添加剂
缓冲液说明Extensively dialyzed
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2025-07-09储存 / 测量温度15.0 / 15.0
曝光时间1.0帧数16
波长0.1127样品-探测器距离1.2486
光源X-ray synchrotron探测器Pilatus3 X 1M
机构 / 束线Stanford Synchrotron Radiation Lightsource (SSRL) / BL4-2 · Menlo Park, CA, USA
q 范围0.103 – 7.479样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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full_entry_zipsasbdb/entries/j2/sasdyj2/source/SASDYJ2.zipdownloaded1053915112fa2a67250dfd762ef0491a80994af1330cdfc35e9ff49f6126edf8b46f992下载查看原文件源站
pddfsasbdb/entries/j2/sasdyj2/source/SASDYJ2.outdownloaded12683d9fd4e84f6c3753fe49199c5da2e126ff3e1597899c6e68ca6ce587a89faea7b下载查看原文件源站
sascifsasbdb/entries/j2/sasdyj2/source/SASDYJ2.sascifnot_available下载查看原文件源站
summarysasbdb/entries/j2/sasdyj2/source/summary.jsondownloaded71579c3a5aa1f7161a6f132c9d8684e30d9a7d5c86c62cb2423ed37ae10dcafbe297下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(8 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:174 个字段值
字段路径原始值
codeSASDYJ2
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleLysozyme pH 7.4 with models
project.publicationnull
project.statusreleased
project.submitted_date2025-11-05
project.released_date2025-11-12
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experiment.instrument.detector.namePilatus3 X 1M
experiment.instrument.detector.resolution0.172
experiment.instrument.nameStanford Synchrotron Radiation Lightsource (SSRL)
experiment.instrument.cityMenlo Park, CA
experiment.instrument.countryUSA
experiment.instrument.beamline_nameBL4-2
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameHen egg white lysozyme
experiment.sample.molecule[0].short_nameLyszoyme
experiment.sample.molecule[0].sequenceKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
experiment.sample.molecule[0].organismGallus gallus
experiment.sample.molecule[0].uniprot_codeP00698
experiment.sample.molecule[0].uniprot_range_first19
experiment.sample.molecule[0].uniprot_range_last147
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQA TNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDG NGMNAWVAWRNRCKGTDVQAWIRGCRL
experiment.sample.molecule[0].mw14.314
experiment.sample.molecule[0].total_mw14.314
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionHen Egg White Lysozyme, purchased from Sigma
experiment.sample.buffer.name20 mM HEPES, 150 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentExtensively dialyzed
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameHen Egg White Lysozyme pH 7.4
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
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experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameAnthony
experiment.contributor[0].contributor_surnameGiannetti
experiment.contributor[0].orcidhttps://orcid.org/0009-0003-4487-4826
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2025-07-09
experiment.storage_temperature15.0
experiment.cell_temperature15.0
experiment.exposure_time1.0
experiment.number_of_frames16
experiment.wavelength0.1127
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experiment.flow_ratenull
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experiment.total_exposure_timenull
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fits[1].p_value0.0
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pddf_softwareBioXTAS RAW
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw10.9
experimental_mw_errornull
guinier_i0_mw10.9
guinier_i0_mw_errornull
porod_mw14.0
porod_mw_errornull
pddf_i0126.0
pddf_i0_error0.11
guinier_i0125.838
guinier_i0_errornull
pddf_rg1.598
pddf_rg_error0.003
guinier_rg1.581
guinier_rg_error0.022
pddf_dmax59.0
pddf_dmax_errornull
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porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first19
guinier_point_last93
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDYJ2_datloglog_img.png
symmetrynull
last_modified2025-11-12T08:45:15.794651+01:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDYJ2
statussuccess
started_at2026-08-11T13:40:01.576243+00:00
finished_at2026-08-11T13:40:10.827971+00:00
source_last_modified2025-11-12T08:45:15.794651+01:00
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查看完整 summary.json 原文
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  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Lysozyme pH 7.4 with models",
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    "released_date": "2025-11-12"
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查看完整 manifest.json 原文
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