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SASDYK2

Histatin 3 peptide

Data type: SASBDB experimental data Status: Published Curve type: Single concentration Last updated: 2025-11-12T04:53:55.833597+01:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Histatin 3 peptide

Concentration— – 10.0 Buffer / pH20 mM HEPES, 150 mM NaCl / 7.4
Experimental temperature15.0 Facility / beamlineStanford Synchrotron Radiation Lightsource (SSRL) / BL4-2
Wavelength0.1127 nmExposure1.0 s × 16

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Histatin-3
View sequence
DSHAKRHHGYKRKFHEKHHSHRGYRSNYLYDN
proteinHomo sapiensP1551620–51monomerMolecule count 14.062 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
1958[3]0.01484745–0.7479287 1/AHas uncertainty columnMissing 011sasbdb/entries/k2/sasdyk2/source/SASDYK2.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)6.6—Å
i0Guinier28.624—arbitrary
i0P(r)29.090.1007arbitrary
mwExperimental3.9—kDa
mwPorod4.0—kDa
porod_volumePorod7.0—ų
rgGuinier1.4850.069Å
rgP(r)1.5890.015Å

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name20 mM HEPES, 150 mM NaClBuffer concentration—
pH7.4Additives—
Buffer descriptionExtensively dialyzed
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2025-07-09Storage / measurement temperature15.0 / 15.0
Exposure time1.0Frames16
Wavelength0.1127Sample-to-detector distance1.2486
SourceX-ray synchrotronDetectorPilatus3 X 1M
Facility / beamlineStanford Synchrotron Radiation Lightsource (SSRL) / BL4-2 · Menlo Park, CA, USA
q range0.148 – 7.479Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

CategoryFileStatusSizeChecksumDownload and View
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sascifsasbdb/entries/k2/sasdyk2/source/SASDYK2.sascifnot_available——DownloadView source fileSource site
summarysasbdb/entries/k2/sasdyk2/source/summary.jsondownloaded6997f647b82684d1c379e078d219bfc96ad3d465dcb16a3a1b0b758d99e897ae88cdDownloadView source fileSource site
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pddf：source record
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sascif：source record
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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json：174 field values
Field pathRaw value
codeSASDYK2
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleHistatin 3
project.publicationnull
project.statusreleased
project.submitted_date2025-11-05
project.released_date2025-11-12
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experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus3 X 1M
experiment.instrument.detector.resolution0.172
experiment.instrument.nameStanford Synchrotron Radiation Lightsource (SSRL)
experiment.instrument.cityMenlo Park, CA
experiment.instrument.countryUSA
experiment.instrument.beamline_nameBL4-2
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameHistatin-3
experiment.sample.molecule[0].short_nameHis3
experiment.sample.molecule[0].sequenceDSHAKRHHGYKRKFHEKHHSHRGYRSNYLYDN
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeP15516
experiment.sample.molecule[0].uniprot_range_first20
experiment.sample.molecule[0].uniprot_range_last51
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMKFFVFALILALMLSMTGADSHAKRHHGYKRKFHEKHHSHRGYRSNYLYDN
experiment.sample.molecule[0].mw4.062
experiment.sample.molecule[0].total_mw4.062
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcesynthetic
experiment.sample.molecule[0].molecule_descriptionSynthetic peptide capped with hydroxyl on the C-terminus.
experiment.sample.buffer.name20 mM HEPES, 150 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentExtensively dialyzed
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameHistatin 3 peptide
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameTopos Bio
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameAnthony
experiment.contributor[0].contributor_surnameGiannetti
experiment.contributor[0].orcidhttps://orcid.org/0009-0003-4487-4826
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2025-07-09
experiment.storage_temperature15.0
experiment.cell_temperature15.0
experiment.exposure_time1.0
experiment.number_of_frames16
experiment.wavelength0.1127
experiment.sample_detector_distance1.2486
experiment.concentration_minnull
experiment.concentration_max10.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.148
experiment.s_max7.479
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].models[0].pdb_link[]
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fits[0].models[0].model_mwnull
fits[0].models[0].bead_radiusnull
fits[0].models[0].lognull
fits[0].models[0].symmetryP1
fits[0].models[0].commentnull
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fits[0].softwareDAMMIN
fits[0].chi_square_value0.89
fits[0].p_value0.284
fits[0].fit_residual_plotSASDYK2_fit1_fitresiduals_img.png
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fits[0].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/refine_GNOMtrun.log
fits[0].software_versionnull
fits[0].description
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fits[1].p_value0.0017
fits[1].fit_residual_plotSASDYK2_fit2_fitresiduals_img.png
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fits[1].software_versionnull
fits[1].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw3.9
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw4.0
porod_mw_errornull
pddf_i029.09
pddf_i0_error0.1007
guinier_i028.624
guinier_i0_errornull
pddf_rg1.589
pddf_rg_error0.015
guinier_rg1.485
guinier_rg_error0.069
pddf_dmax6.6
pddf_dmax_errornull
porod_volume7.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first26
guinier_point_last95
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDYK2_datloglog_img.png
symmetrynull
last_modified2025-11-12T04:53:55.833597+01:00
bragg_peak[]
manifest.json：34 field values
Field pathRaw value
codeSASDYK2
statussuccess
started_at2026-08-11T13:40:44.820898+00:00
finished_at2026-08-11T13:40:53.578852+00:00
source_last_modified2025-11-12T04:53:55.833597+01:00
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View the complete summary.json source
{
  "code": "SASDYK2",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Histatin 3",
    "publication": null,
    "status": "released",
    "submitted_date": "2025-11-05",
    "released_date": "2025-11-12"
  },
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View the complete manifest.json source
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