SASDYN2

endo-β-1,4-xylanase (AcXyn30B_12) from Acetivibrio clariflavus

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2026-02-22T17:21:07.846518+01:00

CAUTION: The reported experimental uncertainties appear inconsistent with the variation in the data, preventing a clear identification of the Guinier region. Derived parameters should be interpreted with caution

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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · endo-β-1,4-xylanase (AcXyn30B_12) from Acetivibrio clariflavus

浓度— – 3.0 缓冲液 / pH50 mM Sodium Phosphate / 7.5
实验温度10.0 设备 / 束线Medical University of Graz / Anton Paar SAXSpace
波长1.54 nm曝光60.0 s × —

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
endo-β-1,4-xylanase (AcXyn30B_12)
查看序列
MGHHHHHHSYTASVDVNTTYQTLEGFGAAIAWYNDYLTTHPNKNDLYRILFYDSGLDILRLRNQYRNSNNFGYDDMEIVKYGKIMNPNLKVLLSSWSPPSDLKRNGVMNGGTLAKENGSFVYEKFADYWYNSLVAYRAKGIIPDYISIQNEPEYESGDWETCIFRETETSEYPSYAKALDAVYEKIKDLPDMPKILGVESAGIMNNTVQNYARYMDLSKVYGIAHHLYNGGDPYNPDSFNDIFRSLARDFADKPLFMTEYDYGTPFTTAELIHNSLVVEGVSGYFYWDLIWENSQRPLVAIEVPRNPEQWTTKEGYIFSDFYYIMQQFAKFTDPGYKRVDASVSSNDIKVSAFVSPDKSKLTMIFINKGYSEHSVALDLKGYSSNKSIIYRTLPEGNERFKKVGSLFGNTVTLPARSVVTVALGVDDEEQIPPQLPTPTPKPESRSAYDIIQAEDYNEMYGIQCETIADDGNKNVAYIENGDYILFKGVDFGTGATGFEASVASAESGGAIEIRLDELYGTTVVKIPVSGTGDWHNYVTVKADIPEIKGKHDLYLVFTGGGGYLFNIDWFVFTGGTVENPVPEVIYGDVNGDGDFNSIDYGYLKMYLLGQIKEFPSKDGMIAADVNGDGTVNSIDYAYMKMRLLGQISKFPVE
proteinAcetivibrio clariflavus——–—monomer分子数 65373.499 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11106[3]0.12588–7.177952517 1/nm含误差列缺失 0112sasbdb/entries/n2/sasdyn2/source/SASDYN2.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
i0Guinier116683.0—arbitrary
mwExperimental73.3—kDa
rgGuinier4.00.532nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50 mM Sodium Phosphate缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2024-01-04储存 / 测量温度10.0 / 10.0
曝光时间60.0帧数—
波长1.54样品-探测器距离1.0
光源X-ray in house探测器Roper Scientific PI-SCX:4300
机构 / 束线Medical University of Graz / Anton Paar SAXSpace · Graz, Austria
q 范围0.126 – 7.178样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图

可下载文件

类别文件状态大小校验值下载与查看
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pddfsasbdb/entries/n2/sasdyn2/source/SASDYN2.outnot_listed——下载查看原文件
sascifsasbdb/entries/n2/sasdyn2/source/SASDYN2.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/n2/sasdyn2/source/summary.jsondownloaded6104831e6329ad3461e2e529d5502585b5fbbb18fdc58dd6086de76932e050c725ca下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(1 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDYN2
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleDeciphering the structural insights and concentration-dependent dimerisation of endo-β-1,4-xylanase (AcXyn30B_12) from Acetivibrio clariflavus using SAXS and computational methods.
project.publication.titleDeciphering the structural insights and concentration-dependent dimerisation of endo-β-1,4-xylanase (AcXyn30B_12) from Acetivibrio clariflavus using SAXS and computational methods.
project.publication.author_listChoudhury B, Goyal A
project.publication.journalFEBS J
project.publication.doi10.1111/febs.70432
project.publication.pmid41685407
project.publication.published_date2026 Feb 13
project.statusreleased
project.submitted_date2025-11-11
project.released_date2026-02-22
pddf_datanull
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pddf_plotnull
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experiment.instrument.detector.nameRoper Scientific PI-SCX:4300
experiment.instrument.detector.resolution24.0
experiment.instrument.nameMedical University of Graz
experiment.instrument.cityGraz
experiment.instrument.countryAustria
experiment.instrument.beamline_nameAnton Paar SAXSpace
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experiment.instrument.type_of_sourceX-ray in house
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experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameendo-β-1,4-xylanase (AcXyn30B_12)
experiment.sample.molecule[0].short_nameAcXyn30B_12
experiment.sample.molecule[0].sequenceMGHHHHHHSYTASVDVNTTYQTLEGFGAAIAWYNDYLTTHPNKNDLYRILFYDSGLDILRLRNQYRNSNNFGYDDMEIVKYGKIMNPNLKVLLSSWSPPSDLKRNGVMNGGTLAKENGSFVYEKFADYWYNSLVAYRAKGIIPDYISIQNEPEYESGDWETCIFRETETSEYPSYAKALDAVYEKIKDLPDMPKILGVESAGIMNNTVQNYARYMDLSKVYGIAHHLYNGGDPYNPDSFNDIFRSLARDFADKPLFMTEYDYGTPFTTAELIHNSLVVEGVSGYFYWDLIWENSQRPLVAIEVPRNPEQWTTKEGYIFSDFYYIMQQFAKFTDPGYKRVDASVSSNDIKVSAFVSPDKSKLTMIFINKGYSEHSVALDLKGYSSNKSIIYRTLPEGNERFKKVGSLFGNTVTLPARSVVTVALGVDDEEQIPPQLPTPTPKPESRSAYDIIQAEDYNEMYGIQCETIADDGNKNVAYIENGDYILFKGVDFGTGATGFEASVASAESGGAIEIRLDELYGTTVVKIPVSGTGDWHNYVTVKADIPEIKGKHDLYLVFTGGGGYLFNIDWFVFTGGTVENPVPEVIYGDVNGDGDFNSIDYGYLKMYLLGQIKEFPSKDGMIAADVNGDGTVNSIDYAYMKMRLLGQISKFPVE
experiment.sample.molecule[0].organismAcetivibrio clariflavus
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequence
experiment.sample.molecule[0].mw73.499
experiment.sample.molecule[0].total_mw73.5
experiment.sample.molecule[0].number_molecules653
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionProtein
experiment.sample.buffer.name50 mM Sodium Phosphate
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameendo-β-1,4-xylanase (AcXyn30B_12) from Acetivibrio clariflavus
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
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experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
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experiment.contributor[0].contributor_nameBipasha
experiment.contributor[0].contributor_surnameChoudhury
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experiment.concentration_unitnull
experiment.date2024-01-04
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_time60.0
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pddf_softwarenull
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i0_calibration_standardnull
descriptionCAUTION: The reported experimental uncertainties appear inconsistent with the variation in the data, preventing a clear identification of the Guinier region. Derived parameters should be interpreted with caution
experiment_descriptionnull
tags[]
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intensities_log_log_plotSASDYN2_datloglog_img.png
symmetrynull
last_modified2026-02-22T17:21:07.846518+01:00
bragg_peak[]
manifest.json:31 个字段值
字段路径原始值
codeSASDYN2
statussuccess
started_at2026-08-11T13:42:51.685725+00:00
finished_at2026-08-11T13:42:57.615384+00:00
source_last_modified2026-02-22T17:21:07.846518+01:00
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查看完整 summary.json 原文
{
  "code": "SASDYN2",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Deciphering the structural insights and concentration-dependent dimerisation of endo-β-1,4-xylanase (AcXyn30B_12) from Acetivibrio clariflavus using SAXS and computational methods.",
    "publication": {
      "title": "Deciphering the structural insights and concentration-dependent dimerisation of endo-β-1,4-xylanase (AcXyn30B_12) from Acetivibrio clariflavus using SAXS and computational methods.",
      "author_list": "Choudhury B, Goyal A",
      "journal": "FEBS J",
      "doi": "10.1111/febs.70432",
      "pmid": "41685407",
      "published_date": "2026 Feb 13"
    },
    "status": "released",
    "submitted_date": "2025-11-11",
    "released_date": "2026-02-22"
  },
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  "pddf_dmax": null,
  "pddf_dmax_error": null,
  "porod_volume": null,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 4,
  "guinier_point_last": 18,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDYN2_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2026-02-22T17:21:07.846518+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
  "code": "SASDYN2",
  "status": "success",
  "started_at": "2026-08-11T13:42:51.685725+00:00",
  "finished_at": "2026-08-11T13:42:57.615384+00:00",
  "source_last_modified": "2026-02-22T17:21:07.846518+01:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDYN2/",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdyn2/source/summary.json",
      "size": 6104,
      "sha256": "831e6329ad3461e2e529d5502585b5fbbb18fdc58dd6086de76932e050c725ca"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDYN2.dat",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdyn2/source/SASDYN2.dat",
      "size": 40576,
      "sha256": "a83ee50dce05b055eb1af7ac3a1b9f0024c3062b5693e8729c9744bfa819c5e6",
      "role": "curve"
    },
    {
      "role": "pddf",
      "status": "not_listed",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdyn2/source/SASDYN2.out"
    },
    {
      "status": "not_available",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDYN2.sascif",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdyn2/source/SASDYN2.sascif",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDYN2.zip",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdyn2/source/SASDYN2.zip",
      "size": 20628,
      "sha256": "cd609ce9afd156f93d80f5a8a22ff43493931bbee7650f0df18940ba9ff56761",
      "role": "full_entry_zip",
      "zip_member_count": 1,
      "zip_validation": "central_directory_readable"
    }
  ]
}