SASDYR7

Glycoside Hydrolase family 9 (AtCel9R) from Acetovibrio thermocellus

Data type: SASBDB experimental data Status: Published Curve type: Merged Last updated: 2026-06-18T15:58:39.669947+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Glycoside Hydrolase family 9 (AtCel9R) from Acetovibrio thermocellus

Concentration3.0 – 15.0 Buffer / pH25 mM Tris, 150 mM NaCl / 8.0
Experimental temperature20.0 Facility / beamlineLaboratoire de Génie Chimique / XEUSS 2.0
Wavelength0.154 nmExposure600.0 s × 12

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
ENDOGLUCANASE Cel9R
View sequence
MGSSNAADYNYGEALQKAIMFYEFQMSGKLPDNIRNNWRGDSCLGDGSDVGLDLTGGWFDAGDHVKFNLPMAYTATMLAWAVYEYKDALQKSGQLGYLMDQIKWASDYFIRCHPEKYVYYYQVGNGDMDHRWWVPAECIDVQAPRPSYKVDLSNPGSTVTAGTAAALAATALVFKDTDPAYAALCIRHAKELFDFAETTMSDKGYTAALNFYTSHSGWYDELSWAGAWIYLADGDETYLEKAEKYVDKWPIESQTTYIAYSWGHCWDDVHYGAALLLAKITNKSLYKEAIERHLDYWTVGFNGQRVRYTPKGLAHLTDWGVLRHATTTAFLACVYSDWSECPREKANIYIDFAKKQADYALGSSGRSYVVGFGVNPPQHPHHRTAHSSWCDSQKVPEYHRHVLYGALVGGPDASDAYVDDIGNYVTNEVACDYNAGFVGLLAKMYEKYGGNPIPNFMAIEEKTNEEIYVEATANSNNGVELKTYLYNKSGWPARVCDKLSFRYFMDLTEYVSAGYNPNDITVSIIYSAAPTAKISKPILYDASKNIYYCEIDLSGTKIFPGSNSDHQKETQFRIQPPAGAPWDNTNDFSYQGIKKNGEVVKEMPVYEDGVLIFGVEPNGTGASHHHHHH
proteinAcetovibrio thermocellusA3DCY5—–—monomerMolecule count 170.633 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
1861[3]0.009972–0.500031 1/AHas uncertainty columnMissing 00sasbdb/entries/r7/sasdyr7/source/SASDYR7.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)10.2—Å
i0Guinier0.00622768—arbitrary
i0P(r)0.006114—arbitrary
mwExperimental63.4—kDa
mwPorod54.1—kDa
porod_volumePorod85.66—ų
rgGuinier3.0840.238Å
rgP(r)3.04—Å

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

Fit 1 · GASBOR gasbori, ATSAS 3.2.1 (r14885)

χ²: 1.9CorMap p: 0.0Unit: 1/A
ModelName / TypeSoftwareSymmetryModel MWPDB DeclarationSource file
1—dummyGASBOR ———Model Image
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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name25 mM Tris, 150 mM NaClBuffer concentration—
pH8.0Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2025-04-04Storage / measurement temperature4.0 / 20.0
Exposure time600.0Frames12
Wavelength0.154Sample-to-detector distance1.26
SourceX-ray in houseDetectorPilatus 1M detector (DECTRIS, Switzerland)
Facility / beamlineLaboratoire de Génie Chimique / XEUSS 2.0 · Toulouse, France
q range0.1 – 5.0Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

CategoryFileStatusSizeChecksumDownload and View
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full_entry_zipsasbdb/entries/r7/sasdyr7/source/SASDYR7.zipdownloaded708571fd5039f123c99ae09da7903c1d19497769d41fd57431c03661e39dbdc16f7d3DownloadView source fileSource site
pddfsasbdb/entries/r7/sasdyr7/source/SASDYR7.outdownloaded80131c053adda9618430250e0993820ac9a13d250befdf344fcc16794cdb1cfd9a7c4DownloadView source fileSource site
sascifsasbdb/entries/r7/sasdyr7/source/SASDYR7.sascifnot_available——DownloadView source fileSource site
summarysasbdb/entries/r7/sasdyr7/source/summary.jsondownloaded774848951b95ed524d1620c4685fbdda5821ab6ce9ee0d7a17158be374728df14207DownloadView source fileSource site
curve:source record
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full_entry_zip:source record and ZIP contents (4 items)
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pddf:source record
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sascif:source record
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summary:source record
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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:156 field values
Field pathRaw value
codeSASDYR7
statusPublished
type_of_curveMerged
angular_unit1/A
project.titleIntegrative SAXS and AFM analysis of engineered carbohydrate-active enzyme assemblies with tunable spatial organization.
project.publication.titleIntegrative SAXS and AFM analysis of engineered carbohydrate-active enzyme assemblies with tunable spatial organization.
project.publication.author_listPardo Larrabeiti I, Eibinger M, Esque J, Pradeau S, Fort S, Moraïs S, Mizrahi I, Bayer EA, Nidetzky B, Montanier CY, Roblin P, Dumon C
project.publication.journalProtein Sci
project.publication.doi10.1002/pro.70649
project.publication.pmid42298785
project.publication.published_date2026 Jul
project.statusreleased
project.submitted_date2026-02-27
project.released_date2026-06-18
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDYR7.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDYR7.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYR7_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYR7_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDYR7_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYR7_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDYR7.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 1M detector (DECTRIS, Switzerland)
experiment.instrument.detector.resolution172.0
experiment.instrument.nameLaboratoire de Génie Chimique
experiment.instrument.cityToulouse
experiment.instrument.countryFrance
experiment.instrument.beamline_nameXEUSS 2.0
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray in house
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameENDOGLUCANASE Cel9R
experiment.sample.molecule[0].short_nameCel9R
experiment.sample.molecule[0].sequenceMGSSNAADYNYGEALQKAIMFYEFQMSGKLPDNIRNNWRGDSCLGDGSDVGLDLTGGWFDAGDHVKFNLPMAYTATMLAWAVYEYKDALQKSGQLGYLMDQIKWASDYFIRCHPEKYVYYYQVGNGDMDHRWWVPAECIDVQAPRPSYKVDLSNPGSTVTAGTAAALAATALVFKDTDPAYAALCIRHAKELFDFAETTMSDKGYTAALNFYTSHSGWYDELSWAGAWIYLADGDETYLEKAEKYVDKWPIESQTTYIAYSWGHCWDDVHYGAALLLAKITNKSLYKEAIERHLDYWTVGFNGQRVRYTPKGLAHLTDWGVLRHATTTAFLACVYSDWSECPREKANIYIDFAKKQADYALGSSGRSYVVGFGVNPPQHPHHRTAHSSWCDSQKVPEYHRHVLYGALVGGPDASDAYVDDIGNYVTNEVACDYNAGFVGLLAKMYEKYGGNPIPNFMAIEEKTNEEIYVEATANSNNGVELKTYLYNKSGWPARVCDKLSFRYFMDLTEYVSAGYNPNDITVSIIYSAAPTAKISKPILYDASKNIYYCEIDLSGTKIFPGSNSDHQKETQFRIQPPAGAPWDNTNDFSYQGIKKNGEVVKEMPVYEDGVLIFGVEPNGTGASHHHHHH
experiment.sample.molecule[0].organismAcetovibrio thermocellus
experiment.sample.molecule[0].uniprot_codeA3DCY5
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMKKLIITVIVSAVLLTALIPQLPVFAADYNYGEALQKAIMFYEFQMSGKLPDNIRNNWRG DSCLGDGSDVGLDLTGGWFDAGDHVKFNLPMAYTATMLAWAVYEYKDALQKSGQLGYLMD QIKWASDYFIRCHPEKYVYYYQVGNGDMDHRWWVPAECIDVQAPRPSYKVDLSNPGSTVT AGTAAALAATALVFKDTDPAYAALCIRHAKELFDFAETTMSDKGYTAALNFYTSHSGWYD ELSWAGAWIYLADGDETYLEKAEKYVDKWPIESQTTYIAYSWGHCWDDVHYGAALLLAKI TNKSLYKEAIERHLDYWTVGFNGQRVRYTPKGLAHLTDWGVLRHATTTAFLACVYSDWSE CPREKANIYIDFAKKQADYALGSSGRSYVVGFGVNPPQHPHHRTAHSSWCDSQKVPEYHR HVLYGALVGGPDASDAYVDDIGNYVTNEVACDYNAGFVGLLAKMYEKYGGNPIPNFMAIE EKTNEEIYVEATANSNNGVELKTYLYNKSGWPARVCDKLSFRYFMDLTEYVSAGYNPNDI TVSIIYSAAPTAKISKPILYDASKNIYYCEIDLSGTKIFPGSNSDHQKETQFRIQPPAGA PWDNTNDFSYQGIKKNGEVVKEMPVYEDGILIFGVEPNGTGPATPTPKPSVNPSPSPTPT SDILYGDINLDGKINSSDVTLLKRYIVKSIDVFPTADPERSLIASDVNGDGRVNSTDYSY LKRYVLKIIPTIPGNS
experiment.sample.molecule[0].mw70.633
experiment.sample.molecule[0].total_mw70.633
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.buffer.name25 mM Tris, 150 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph8.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameGlycoside Hydrolase family 9 (AtCel9R) from Acetovibrio thermocellus
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameToulouse Biotechnology Institute
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameIker
experiment.contributor[0].contributor_surnamePARDO
experiment.contributor[0].orcid
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2025-04-04
experiment.storage_temperature4.0
experiment.cell_temperature20.0
experiment.exposure_time600.0
experiment.number_of_frames12
experiment.wavelength0.154
experiment.sample_detector_distance1.26
experiment.concentration_min3.0
experiment.concentration_max15.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.1
experiment.s_max5.0
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDYR7_fit1_model1_img.png
fits[0].models[0].softwareGASBOR
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modeldummy
fits[0].models[0].software_versionnull
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fits[0].models[0].model_mwnull
fits[0].models[0].bead_radiusnull
fits[0].models[0].lognull
fits[0].models[0].symmetrynull
fits[0].models[0].commentnull
fits[0].models[0].user1331
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDYR7_fit1_fixed_fit_img.png
fits[0].softwareGASBOR
fits[0].chi_square_value1.9
fits[0].p_value0.0
fits[0].fit_residual_plotSASDYR7_fit1_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDYR7_fit1.fir
fits[0].fit_lognull
fits[0].software_versiongasbori, ATSAS 3.2.1 (r14885)
fits[0].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw63.4
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw54.1
porod_mw_errornull
pddf_i00.006114
pddf_i0_errornull
guinier_i00.00622768
guinier_i0_errornull
pddf_rg3.04
pddf_rg_errornull
guinier_rg3.084
guinier_rg_error0.238
pddf_dmax10.2
pddf_dmax_errornull
porod_volume85.66
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last57
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDYR7_datloglog_img.png
symmetrynull
last_modified2026-06-18T15:58:39.669947+02:00
bragg_peak[]
manifest.json:34 field values
Field pathRaw value
codeSASDYR7
statussuccess
started_at2026-08-11T15:37:34.534573+00:00
finished_at2026-08-11T15:37:42.681682+00:00
source_last_modified2026-06-18T15:58:39.669947+02:00
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View the complete summary.json source
{
  "code": "SASDYR7",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/A",
  "project": {
    "title": "Integrative SAXS and AFM analysis of engineered carbohydrate-active enzyme assemblies with tunable spatial organization.",
    "publication": {
      "title": "Integrative SAXS and AFM analysis of engineered carbohydrate-active enzyme assemblies with tunable spatial organization.",
      "author_list": "Pardo Larrabeiti I, Eibinger M, Esque J, Pradeau S, Fort S, Moraïs S, Mizrahi I, Bayer EA, Nidetzky B, Montanier CY, Roblin P, Dumon C",
      "journal": "Protein Sci",
      "doi": "10.1002/pro.70649",
      "pmid": "42298785",
      "published_date": "2026 Jul"
    },
    "status": "released",
    "submitted_date": "2026-02-27",
    "released_date": "2026-06-18"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDYR7.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDYR7.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYR7_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYR7_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDYR7_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYR7_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDYR7.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus 1M detector (DECTRIS, Switzerland)",
        "resolution": 172.0
      },
      "name": "Laboratoire de Génie Chimique",
      "city": "Toulouse",
      "country": "France",
      "beamline_name": "XEUSS 2.0",
      "beam_geometry": null,
      "type_of_source": "X-ray in house",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "ENDOGLUCANASE Cel9R",
          "short_name": "Cel9R",
          "sequence": "MGSSNAADYNYGEALQKAIMFYEFQMSGKLPDNIRNNWRGDSCLGDGSDVGLDLTGGWFDAGDHVKFNLPMAYTATMLAWAVYEYKDALQKSGQLGYLMDQIKWASDYFIRCHPEKYVYYYQVGNGDMDHRWWVPAECIDVQAPRPSYKVDLSNPGSTVTAGTAAALAATALVFKDTDPAYAALCIRHAKELFDFAETTMSDKGYTAALNFYTSHSGWYDELSWAGAWIYLADGDETYLEKAEKYVDKWPIESQTTYIAYSWGHCWDDVHYGAALLLAKITNKSLYKEAIERHLDYWTVGFNGQRVRYTPKGLAHLTDWGVLRHATTTAFLACVYSDWSECPREKANIYIDFAKKQADYALGSSGRSYVVGFGVNPPQHPHHRTAHSSWCDSQKVPEYHRHVLYGALVGGPDASDAYVDDIGNYVTNEVACDYNAGFVGLLAKMYEKYGGNPIPNFMAIEEKTNEEIYVEATANSNNGVELKTYLYNKSGWPARVCDKLSFRYFMDLTEYVSAGYNPNDITVSIIYSAAPTAKISKPILYDASKNIYYCEIDLSGTKIFPGSNSDHQKETQFRIQPPAGAPWDNTNDFSYQGIKKNGEVVKEMPVYEDGVLIFGVEPNGTGASHHHHHH",
          "organism": "Acetovibrio thermocellus",
          "uniprot_code": "A3DCY5",
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View the complete manifest.json source
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