SASDYT7

Glycoside Hydrolase family 11 (AtXyn11A) from Acetovibrio thermocellus

Data type: SASBDB experimental data Status: Published Curve type: Merged Last updated: 2026-06-18T15:58:40.081507+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Glycoside Hydrolase family 11 (AtXyn11A) from Acetovibrio thermocellus

Concentration3.0 – 36.0 Buffer / pH25 mM Tris, 150 mM NaCl / 8.0
Experimental temperature20.0 Facility / beamlineLaboratoire de Génie Chimique / XEUSS 2.0
Wavelength0.154 nmExposure600.0 s × 12

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Endoxylanase Xyn11A
View sequence
MGSSNADVVITSNQTGTHGGYNFEYWKDTGNGTMVLKDGGAFSCEWSNINNILFRKGFKYDETKTHDQLGYITVTYSCNYQPNGNSYLGVYGWTSNPLVEYYIIESWGTWRPPGATPKGTITVDGGTYEIYETTRVNQPSIKGTATFQQYWSVRTSKRTSGTISVTEHFKAWERLGMKMGKMYEVALVVEGYQSSGKADVTSMTITVGNAPSTSSPPGPTPEPTPRSAFSKIEAEEYNSLKSSTIQTIGTSDGGSGIGYIESGDYLVFNKINFGNGANSFKARVASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWNNYEEKSCSITNTTGQHDLYLVFSGPVNIDYFIFDSKGVNPASHHHHHH
proteinAcetovibrio thermocellusO52779—–—monomerMolecule count 139.847 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
1861[3]0.009972–0.500031 1/AHas uncertainty columnMissing 00sasbdb/entries/t7/sasdyt7/source/SASDYT7.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)10.0—Å
i0Guinier0.00347077—arbitrary
i0P(r)0.00355—arbitrary
mwExperimental40.1—kDa
mwPorod41.6—kDa
porod_volumePorod50.2—ų
rgGuinier2.9090.098Å
rgP(r)3.1—Å

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

Fit 1 · GASBOR gasbori, ATSAS 3.2.1 (r14885)

χ²: 1.82CorMap p: 0.0Unit: 1/A
ModelName / TypeSoftwareSymmetryModel MWPDB DeclarationSource file
1—dummyGASBOR ———Model Image
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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name25 mM Tris, 150 mM NaClBuffer concentration—
pH8.0Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2025-04-04Storage / measurement temperature4.0 / 20.0
Exposure time600.0Frames12
Wavelength0.154Sample-to-detector distance1.26
SourceX-ray in houseDetectorPilatus 1M detector (DECTRIS, Switzerland)
Facility / beamlineLaboratoire de Génie Chimique / XEUSS 2.0 · Toulouse, France
q range0.1 – 5.0Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:156 field values
Field pathRaw value
codeSASDYT7
statusPublished
type_of_curveMerged
angular_unit1/A
project.titleIntegrative SAXS and AFM analysis of engineered carbohydrate-active enzyme assemblies with tunable spatial organization.
project.publication.titleIntegrative SAXS and AFM analysis of engineered carbohydrate-active enzyme assemblies with tunable spatial organization.
project.publication.author_listPardo Larrabeiti I, Eibinger M, Esque J, Pradeau S, Fort S, Moraïs S, Mizrahi I, Bayer EA, Nidetzky B, Montanier CY, Roblin P, Dumon C
project.publication.journalProtein Sci
project.publication.doi10.1002/pro.70649
project.publication.pmid42298785
project.publication.published_date2026 Jul
project.statusreleased
project.submitted_date2026-02-27
project.released_date2026-06-18
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experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 1M detector (DECTRIS, Switzerland)
experiment.instrument.detector.resolution172.0
experiment.instrument.nameLaboratoire de Génie Chimique
experiment.instrument.cityToulouse
experiment.instrument.countryFrance
experiment.instrument.beamline_nameXEUSS 2.0
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray in house
experiment.instrument.point_sourcenull
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experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
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experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameEndoxylanase Xyn11A
experiment.sample.molecule[0].short_nameXyn11A
experiment.sample.molecule[0].sequenceMGSSNADVVITSNQTGTHGGYNFEYWKDTGNGTMVLKDGGAFSCEWSNINNILFRKGFKYDETKTHDQLGYITVTYSCNYQPNGNSYLGVYGWTSNPLVEYYIIESWGTWRPPGATPKGTITVDGGTYEIYETTRVNQPSIKGTATFQQYWSVRTSKRTSGTISVTEHFKAWERLGMKMGKMYEVALVVEGYQSSGKADVTSMTITVGNAPSTSSPPGPTPEPTPRSAFSKIEAEEYNSLKSSTIQTIGTSDGGSGIGYIESGDYLVFNKINFGNGANSFKARVASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWNNYEEKSCSITNTTGQHDLYLVFSGPVNIDYFIFDSKGVNPASHHHHHH
experiment.sample.molecule[0].organismAcetovibrio thermocellus
experiment.sample.molecule[0].uniprot_codeO52779
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMKQKLLVTFLILITFTVSLTLFPVNVRADVVITSNQTGTHGGYNFEYWKDTGNGTMVLKD GGAFSCEWSNINNILFRKGFKYDETKTHDQLGYITVTYSCNYQPNGNSYLGVYGWTSNPL VEYYIIESWGTWRPPGATPKGTITVDGGTYEIYETTRVNQPSIKGTATFQQYWSVRTSKR TSGTISVTEHFKAWERLGMKMGKMYEVALVVEGYQSSGKADVTSMTITVGNAPSTSSPPG PTPEPTPRSAFSKIEAEEYNSLKSSTIQTIGTSDGGSGIGYIESGDYLVFNKINFGNGAN SFKARVASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWNNYEEKSCSITNTTGQHDLYL VFSGPVNIDYFIFDSKGVNPTPTPTSPPQQDQVLGDLNGDKQVNSTDYTALKRHLLNITR LSGTALANADVNRDGKVDSTDLMMLHRYLLRIISKLG
experiment.sample.molecule[0].mw39.847
experiment.sample.molecule[0].total_mw39.847
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.buffer.name25 mM Tris, 150 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
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experiment.sample.buffer.pkanull
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experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameGlycoside Hydrolase family 11 (AtXyn11A) from Acetovibrio thermocellus
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
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experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameToulouse Biotechnology Institute
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameIker
experiment.contributor[0].contributor_surnamePARDO
experiment.contributor[0].orcid
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experiment.concentration_unitnull
experiment.date2025-04-04
experiment.storage_temperature4.0
experiment.cell_temperature20.0
experiment.exposure_time600.0
experiment.number_of_frames12
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estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw40.1
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw41.6
porod_mw_errornull
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porod_volume50.2
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estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last61
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDYT7_datloglog_img.png
symmetrynull
last_modified2026-06-18T15:58:40.081507+02:00
bragg_peak[]
manifest.json:34 field values
Field pathRaw value
codeSASDYT7
statussuccess
started_at2026-08-11T15:39:40.322534+00:00
finished_at2026-08-11T15:39:48.146742+00:00
source_last_modified2026-06-18T15:58:40.081507+02:00
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View the complete summary.json source
{
  "code": "SASDYT7",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/A",
  "project": {
    "title": "Integrative SAXS and AFM analysis of engineered carbohydrate-active enzyme assemblies with tunable spatial organization.",
    "publication": {
      "title": "Integrative SAXS and AFM analysis of engineered carbohydrate-active enzyme assemblies with tunable spatial organization.",
      "author_list": "Pardo Larrabeiti I, Eibinger M, Esque J, Pradeau S, Fort S, Moraïs S, Mizrahi I, Bayer EA, Nidetzky B, Montanier CY, Roblin P, Dumon C",
      "journal": "Protein Sci",
      "doi": "10.1002/pro.70649",
      "pmid": "42298785",
      "published_date": "2026 Jul"
    },
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    "released_date": "2026-06-18"
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          "number_molecules": 1,
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          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
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