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{
"code": "SASDYY6",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/A",
"project": {
"title": "Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus.",
"publication": {
"title": "Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus.",
"author_list": "Sirigu S, Roret T, Mocaër PY, Larocque R, Jouanneau D, Legrand P, Baudoux AC, Czjzek M",
"journal": "Acta Crystallogr D Struct Biol",
"doi": "10.1107/S2059798326005425",
"pmid": "42308020",
"published_date": "2026 Jul 1"
},
"status": "released",
"submitted_date": "2026-02-14",
"released_date": "2026-06-20"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDYY6.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDYY6.dat",
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"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYY6_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDYY6_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYY6_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDYY6.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "CCD",
"name": "AVIEX PCCD170170",
"resolution": null
},
"name": "SOLEIL",
"city": "Saint-Aubin",
"country": "France",
"beamline_name": "SWING",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
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"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "chaperon for trimerisation of Dpo31",
"short_name": "Dpo31-D4",
"sequence": "DYAEYFENSARGVIPLGVI\r\nVTLDGRKVRPASAGDDIIGVVSGTAILAAGDSQFHWGGRYLAGEFGELLYHDVDVDGK\r\nIERQPVENPEYDPSVPNVPRSQRPEEWSCIGLVGQLHVRVSSDVAAGDRVAAGDGGIG\r\nVPGDNGMICMEIKQAYDSGKGYAVALCLHK",
"organism": "Cobetia phage Carin1",
"uniprot_code": null,
"uniprot_range_first": 666,
"uniprot_range_last": 828,
"oligomerization": "trimer",
"molecular_type": "protein",
"uniprot_sequence": "",
"mw": 18.0,
"total_mw": 54.0,
"number_molecules": 3,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "trimeric domain D4 that stabilizes the trimer formation of the viral depolymerase Dpo31"
}
],
"buffer": {
"name": "Tris-HCl 50 mM pH 8, NaCl 100 mM",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "trimeric chaperon domain D4 of depolymerase Dpo31",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "LBI2M, Sorbonne Université CNRS, UMR8227",
"webpage": null
}
],
"contributor_name": "Mirjam",
"contributor_surname": "Czjzek",
"orcid": "https://orcid.org/0000-0002-7483-2841"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2022-04-14",
"storage_temperature": 4.0,
"cell_temperature": 15.0,
"exposure_time": 0.5,
"number_of_frames": 250,
"wavelength": 1.033,
"sample_detector_distance": 1.807,
"concentration_min": null,
"concentration_max": 9.86,
"sample_volume": 70.0,
"flow_rate": 0.2,
"s_min": 0.037,
"s_max": 5.148,
"total_exposure_time": null,
"seccolumn": 10
},
"fits": [
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"software": "GASBOR",
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"bead_radius": null,
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}
],
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"software": "GASBOR",
"chi_square_value": 25.4016,
"p_value": 0.0,
"fit_residual_plot": "SASDYY6_fit1_fitresiduals_img.png",
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},
{
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"software": "Coot",
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"type_of_model": "atomic",
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}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDYY6_fit2_fixed_fit_img.png",
"software": "CRYSOL",
"chi_square_value": 8.196769,
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"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDYY6_fit2.fit",
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"software_version": null,
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}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "4.5a",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 54.0,
"experimental_mw_error": null,
"guinier_i0_mw": 53.5,
"guinier_i0_mw_error": null,
"porod_mw": 54.26,
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"pddf_i0": 0.06983,
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"guinier_i0": 0.0703051,
"guinier_i0_error": null,
"pddf_rg": 2.49,
"pddf_rg_error": null,
"guinier_rg": 2.545,
"guinier_rg_error": 0.021,
"pddf_dmax": 6.4,
"pddf_dmax_error": null,
"porod_volume": 65.77,
"porod_volume_error": null,
"estimated_volume": null,
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"guinier_point_first": 36,
"guinier_point_last": 115,
"pddf_point_first": null,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDYY6_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-06-20T16:07:22.553989+02:00",
"bragg_peak": []
}
