查看完整 summary.json 原文
{
"code": "SASDYZ6",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/A",
"project": {
"title": "Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus.",
"publication": {
"title": "Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus.",
"author_list": "Sirigu S, Roret T, Mocaër PY, Larocque R, Jouanneau D, Legrand P, Baudoux AC, Czjzek M",
"journal": "Acta Crystallogr D Struct Biol",
"doi": "10.1107/S2059798326005425",
"pmid": "42308020",
"published_date": "2026 Jul 1"
},
"status": "released",
"submitted_date": "2026-02-14",
"released_date": "2026-06-20"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDYZ6.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDYZ6.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYZ6_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYZ6_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDYZ6_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYZ6_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDYZ6.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "CCD",
"name": "AVIEX PCCD170170",
"resolution": null
},
"name": "SOLEIL",
"city": "Saint-Aubin",
"country": "France",
"beamline_name": "SWING",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "tailspike protein depolymerase Dpo31",
"short_name": "Dpo31",
"sequence": "ATTVFPYAFRIFESSDLEVYLTDEDGDQ\r\nALLIEGTDYTVSGAGDEEGGEITFPVSGDPLDDGETLTILRVIDITQETDLKNQGAYY\r\nPEVVEDEFDRSRMIDQQQQEQLDRALIKTETGDRWEGQGVPAKNFAMSDPVEDTDLPT\r\nVRWTKDYVTQMAEGITGDIGAYTVVAPTSGDEKRLDEWMDDIQRPDDSLVVADGGTEA\r\nRSLSERFADSASYQDYGIAGDGTTNDTAAFAALESDRSSDAIELHGNTYLVDEIPNGN\r\nAYRDAVWSLDGEDLSISEYGGLVTGTPTTGAFEPAYTGGVNNTPTTSGRTNKHTRAIL\r\nASQNCRADFARSACVASIYSWAYGNVSGNFASRQSIAGAPQTVNIGSEEGQALGFQSG\r\nNYTTQFCRAEGSTTFNIGSDDCAASGAHSGTISSLESYAGRGHDFRGTPVFDDGVLVD\r\nITIDDAGAGYVPGSDVMYLQNRQFGNTTDAVITYTVDGTGGVSAITITDGGSGYSGIV\r\nAARIDTFGDYSLVMASARSKIEDQFCAAIASDNARVRGRESAVIASDGGVVNEDNSVV\r\nIGSVDSTSNGARSGIYTGSGCETTGAGAVVIGGVNAKASNDGAIVMGRGVDSEFARSL\r\nVFGDGGSGAAASTAGRKFQVTAAGNVTAAGTITGSTTYA",
"organism": "Cobetia phage Carin1",
"uniprot_code": null,
"uniprot_range_first": 17,
"uniprot_range_last": 665,
"oligomerization": "trimer",
"molecular_type": "protein",
"uniprot_sequence": "",
"mw": 67.5,
"total_mw": 202.5,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "trimeric tailspike protein that contains a depolymerase from the marine Cobetia phage Carin1, mature form, Dpo31"
}
],
"buffer": {
"name": "Tris-HCl 50 mM pH 8, NaCl 100 mM",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "trimeric tailspike protein depolymerase Dpo31, mature form without D4",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "LBI2M, Sorbonne Université CNRS, UMR8227",
"webpage": null
}
],
"contributor_name": "Mirjam",
"contributor_surname": "Czjzek",
"orcid": "https://orcid.org/0000-0002-7483-2841"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2019-07-10",
"storage_temperature": 4.0,
"cell_temperature": 15.0,
"exposure_time": 0.5,
"number_of_frames": 250,
"wavelength": 0.1033,
"sample_detector_distance": 1.807,
"concentration_min": null,
"concentration_max": 23.6,
"sample_volume": 70.0,
"flow_rate": 0.2,
"s_min": 0.032,
"s_max": 5.253,
"total_exposure_time": null,
"seccolumn": 23
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDYZ6_fit1_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDYZ6_fit1_model1.cif",
"model_mw": null,
"bead_radius": null,
"log": "https://www.sasbdb.org/media/log_files/BestAve_5953_carin1-20_Px-2023.log",
"symmetry": "P1",
"comment": null,
"user": 1029
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDYZ6_fit1_fixed_fit_img.png",
"software": "DAMMIF",
"chi_square_value": 4.913,
"p_value": 0.0,
"fit_residual_plot": "SASDYZ6_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDYZ6_fit1.fir",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/BestAve_5953_carin1-20_Px-2023.log",
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 185.8,
"experimental_mw_error": null,
"guinier_i0_mw": 213.0,
"guinier_i0_mw_error": null,
"porod_mw": 217.0,
"porod_mw_error": null,
"pddf_i0": 0.1707,
"pddf_i0_error": null,
"guinier_i0": 0.167443,
"guinier_i0_error": null,
"pddf_rg": 7.58,
"pddf_rg_error": null,
"guinier_rg": 6.99,
"guinier_rg_error": 0.411,
"pddf_dmax": 28.59,
"pddf_dmax_error": null,
"porod_volume": 307.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 9,
"guinier_point_last": 34,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDYZ6_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-06-20T16:07:22.968337+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDYZ6",
"status": "success",
"started_at": "2026-08-11T15:19:56.138115+00:00",
"finished_at": "2026-08-11T15:20:04.005205+00:00",
"source_last_modified": "2026-06-20T16:07:22.968337+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDYZ6/",
"path": "/data/saxsdb/sasbdb/entries/z6/sasdyz6/source/summary.json",
"size": 7304,
"sha256": "6651784c36e6d74da83727ac74d57a98f43271384e568975b03f4835a091e433"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDYZ6.dat",
"path": "/data/saxsdb/sasbdb/entries/z6/sasdyz6/source/SASDYZ6.dat",
"size": 53020,
"sha256": "0c205aa15a29cc32ed29b01a8e5b422e768259bccf9031405b3f76d562c03f0f",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDYZ6.out",
"path": "/data/saxsdb/sasbdb/entries/z6/sasdyz6/source/SASDYZ6.out",
"size": 80386,
"sha256": "54e4c72b366b3ce24e2d8fe68b434b552cd69e36db62b11c58e9e2d4a6b2aee2",
"role": "pddf"
},
{
"status": "not_available",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDYZ6.sascif",
"path": "/data/saxsdb/sasbdb/entries/z6/sasdyz6/source/SASDYZ6.sascif",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDYZ6.zip",
"path": "/data/saxsdb/sasbdb/entries/z6/sasdyz6/source/SASDYZ6.zip",
"size": 64127,
"sha256": "1a8213d66270a118d3e59bf70cd8e8cae8f06bd8200a0a64a4bbdf6f25c16d2b",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}
