查看完整 summary.json 原文
{
"code": "SASDZ78",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/A",
"project": {
"title": "High-resolution structure of the vaccinia virus phospholipase D-fold endonuclease K4.",
"publication": {
"title": "High-resolution structure of the vaccinia virus phospholipase D-fold endonuclease K4.",
"author_list": "Gröger H, Trouba C, Barbaste J, Lacroix G, Schoehn G, Burmeister WP, Tarbouriech N",
"journal": "J Mol Biol",
"doi": "10.1016/j.jmb.2026.169961",
"pmid": "42526583",
"published_date": "2026 Jul 29"
},
"status": "released",
"submitted_date": "2026-05-14",
"released_date": "2026-08-03"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDZ78.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDZ78.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDZ78_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDZ78_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDZ78_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDZ78_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDZ78.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Eiger 4M",
"resolution": 75.0
},
"name": "SOLEIL",
"city": "Saint-Aubin",
"country": "France",
"beamline_name": "SWING",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Virion nicking-joining enzyme (octamer)",
"short_name": null,
"sequence": "GAMANPDNTIAVITETIPIGMQFDKVYLSTFNMWREILSNTTKTLDISSFYWSLSDEVGTNFGTIILNEIVQLPKRGVRVRVAVNKSNKPLKDVERLQMAGVEVRYIDITNILGGVLHTKFWISDNTHIYLGSANMDWRSLTQVKELGIAIFNNRNLAADLTQIFEVYWYLGVNNLPYNWKNFYPSYYNTDHPLSINVSGVPHSVFIASAPQQLCTMERTNDLTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWPYIEDELRRSAIDRQVSVKLLISCWQRSSFIMRNFLRSIAMLKSKNIDIEVKLFIVPDADPPIPYSRVNHAKYMVTDKTAYIGTSNWTGNYFTDTCGASINITPDDGLGLRQQLEDIFMRDWNSKYSYELYDTSPTKRCKLLKNMKQCTNDIYCDEIQPEKEIPEYSLE",
"organism": "Vaccinia virus (strain Copenhagen)",
"uniprot_code": "P20537",
"uniprot_range_first": 2,
"uniprot_range_last": 424,
"oligomerization": "octamer",
"molecular_type": "protein",
"uniprot_sequence": "MNPDNTIAVITETIPIGMQFDKVYLSTFNMWREILSNTTKTLDISSFYWSLSDEVGTNFG\nTIILNEIVQLPKRGVRVRVAVNKSNKPLKDVERLQMAGVEVRYIDITNILGGVLHTKFWI\nSDNTHIYLGSANMDWRSLTQVKELGIAIFNNRNLAADLTQIFEVYWYLGVNNLPYNWKNF\nYPSYYNTDHPLSINVSGVPHSVFIASAPQQLCTMERTNDLTALLSCIRNASKFVYVSVMN\nFIPIIYSKAGKILFWPYIEDELRRSAIDRQVSVKLLISCWQRSSFIMRNFLRSIAMLKSK\nNIDIEVKLFIVPDADPPIPYSRVNHAKYMVTDKTAYIGTSNWTGNYFTDTCGASINITPD\nDGLGLRQQLEDIFMRDWNSKYSYELYDTSPTKRCKLLKNMKQCTNDIYCDEIQPEKEIPE\nYSLE",
"mw": 49.076,
"total_mw": 392.608,
"number_molecules": 8,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
"name": "20 mM Tris pH 7.5, 150 mM NaCl, 0.5mM TCEP",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Octameric Assembly of the Phospholipase D–Like (PLD-Fold) Nuclease K4 Domain in the Vaccinia Virion Nicking-Joining Enzyme",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "IBS",
"address": "Grenoble, France",
"full_name": "Institut de Biologie Structurale",
"webpage": ""
}
],
"contributor_name": "Henri",
"contributor_surname": "Gröger",
"orcid": "https://orcid.org/0009-0003-5147-947X"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2024-10-14",
"storage_temperature": 20.0,
"cell_temperature": 20.0,
"exposure_time": 1.0,
"number_of_frames": 630,
"wavelength": 0.1033,
"sample_detector_distance": 2.0,
"concentration_min": null,
"concentration_max": 1.0,
"sample_volume": 45.0,
"flow_rate": 0.3,
"s_min": 0.036,
"s_max": 1.496,
"total_exposure_time": null,
"seccolumn": 2
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDZ78_fit1_model1_img.png",
"software": "Phenix",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDZ78_fit1_model1.pdb",
"model_mw": 382.4,
"bead_radius": null,
"log": null,
"symmetry": "C2",
"comment": "Full octamer",
"user": 1362
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDZ78_fit1_fixed_fit_img.png",
"software": "CRYSOL",
"chi_square_value": 0.026,
"p_value": 0.0023,
"fit_residual_plot": "SASDZ78_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDZ78_fit1.fit",
"fit_log": null,
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": "Molecular mass calculated from the Porod volume using 0.83 Da∙Å-3 obtained from the protein specific mass of 1,37 g∙cm-3.\r\nThe sequence of the construct after tag-cleavage is provided.",
"experiment_description": null,
"tags": [],
"intensity_unit": null,
"experimental_mw": 407.0,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 407.0,
"porod_mw_error": null,
"pddf_i0": 0.01297,
"pddf_i0_error": null,
"guinier_i0": 0.0129007,
"guinier_i0_error": null,
"pddf_rg": 5.07,
"pddf_rg_error": 0.01,
"guinier_rg": 5.03,
"guinier_rg_error": 0.094,
"pddf_dmax": 18.0,
"pddf_dmax_error": 1.7,
"porod_volume": 491.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 25,
"guinier_point_last": 37,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDZ78_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-08-03T09:48:39.841183+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDZ78",
"status": "success",
"started_at": "2026-08-11T15:47:31.233649+00:00",
"finished_at": "2026-08-11T15:47:39.230476+00:00",
"source_last_modified": "2026-08-03T09:48:39.841183+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDZ78/",
"path": "/data/saxsdb/sasbdb/entries/78/sasdz78/source/summary.json",
"size": 7379,
"sha256": "924c027bc1d65ea1bff3c7ccb3366a923bc2863b84a6e27b9773dc54aa06516d"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDZ78.dat",
"path": "/data/saxsdb/sasbdb/entries/78/sasdz78/source/SASDZ78.dat",
"size": 16161,
"sha256": "79058b3038cada887a1000a550317c6a0f3220d543c03037a50ab2df9c536b6f",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDZ78.out",
"path": "/data/saxsdb/sasbdb/entries/78/sasdz78/source/SASDZ78.out",
"size": 32673,
"sha256": "5132cbe35b099622ecce27f6db694431f82a80a581eb0d6562d0707bd9b115be",
"role": "pddf"
},
{
"status": "not_available",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDZ78.sascif",
"path": "/data/saxsdb/sasbdb/entries/78/sasdz78/source/SASDZ78.sascif",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDZ78.zip",
"path": "/data/saxsdb/sasbdb/entries/78/sasdz78/source/SASDZ78.zip",
"size": 573864,
"sha256": "fedcf86bdf57e1a981d3ea7d70aa5eb93f05915c3184b324ef6f98dae7aaa57a",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}
