查看完整 summary.json 原文
{
"code": "SASDZB8",
"status": "Published",
"type_of_curve": "SEC-SAS",
"angular_unit": "1/A",
"project": {
"title": "Schistosoma mansoni Venom Allergen-like protein 11 (SmVAL11) in complex with cognate polyclonal antibody (pAb anti-SmVAL11)",
"publication": null,
"status": "released",
"submitted_date": "2026-05-18",
"released_date": "2026-07-28"
},
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"name": "Eiger 4M",
"resolution": 75.0
},
"name": "SOLEIL",
"city": "Saint-Aubin",
"country": "France",
"beamline_name": "SWING",
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"type_of_source": "X-ray synchrotron",
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"molecule": [
{
"long_name": "Venom Allergen-like protein 11",
"short_name": "SmVAL11",
"sequence": "MSRLDDFREDCFRAHNEKRLLHGVCALRHSLALDKTAQDWAEALLSEDGIKNSPLSSRGEVGESISVRTSTGTHVDMQGHEVVNTWHSDAENYNYENGKGPAGNFTQLVWSSTREVGFGKACGPGKCVVVAHYRPPGNVLGRYLENVFRPKKSVKDVKQPIRNTFALNNDTPKTVITETLTESDGKQYSVRREISDLTDDKGKNKKLYLVGQGKKVEYFSCCFNNRTRRCINEVYTDACKEQKKAKSSISPDGHLVDNSKKLQESIHSVVQLHNQYRSQHGSNPLVLDQNLSNMAQQWADHLLQQSHLSNSGYVYRGMKVGENLGSRWSNGPMELNCKDLIEHWYQESGKYKFNSEPDSIQGIGNFTQIVWTSSERIGVGIAIQSYKSGEDLHKDSKMILVCLYHPPGNVISQFQNNVKKAIK",
"organism": "Schistosoma mansoni",
"uniprot_code": "Q1WL54",
"uniprot_range_first": 1,
"uniprot_range_last": 423,
"oligomerization": "other",
"molecular_type": "protein",
"uniprot_sequence": "MSRLDDFREDCFRAHNEKRLLHGVCALRHSLALDKTAQDWAEALLSEDGIKNSPLSSRGE\nVGESISVRTSTGTHVDMQGHEVVNTWHSDAENYNYENGKGPAGNFTQLVWSSTREVGFGK\nACGPGKCVVVAHYRPPGNVLGRYLENVFRPKKSVKDVKQPIRNTFALNNDTPKTVITETL\nTESDGKQYSVRREISDLTDDKGKNKKLYLVGQGKKVEYFSCCFNNRTRRCINEVYTDACK\nEQKKAKSSISPDGHLVDNSKKLQESIHSVVQLHNQYRSQHGSNPLVLDQNLSNMAQQWAD\nHLLQQSHLSNSGYVYRGMKVGENLGSRWSNGPMELNCKDLIEHWYQESGKYKFNSEPDSI\nQGIGNFTQIVWTSSERIGVGIAIQSYKSGEDLHKDSKMILVCLYHPPGNVISQFQNNVKK\nAIK",
"mw": 47.0,
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"number_molecules": 3,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "Schistosoma mansoni Venom Allergen-like protein 11 (SmVAL11) is a 47 kDa protein composed by two symmetrical domains separated by a flexible linker. The latter, in our experience, undergoes autocleavage in vitro, with an unknown mechanism."
},
{
"long_name": "Polyclonal antibody anti-SmVAL11",
"short_name": "pAb anti-SmVAL11",
"sequence": "A",
"organism": "Lagomorph",
"uniprot_code": null,
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "",
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"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "Polyclonal antibody raised against SmVAL11 in rabbit."
}
],
"buffer": {
"name": "25 mM MES, 125 mM NaCl, 1 mM EDTA",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 6.8,
"deuteration": null
},
"purity_method": null,
"name": "Schistosoma mansoni Venom Allergen-like protein isoform 11 (SmVAL11) in complex with pAb anti-SmVAL11, ratio 2:1 (2nd peak)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "University of Lyon",
"webpage": null
}
],
"contributor_name": "Adriana Erica",
"contributor_surname": "Miele",
"orcid": "http://orcid.org/0000-0002-4637-2606"
}
],
"concentration_method": null,
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"date": "2025-01-22",
"storage_temperature": 4.0,
"cell_temperature": 20.0,
"exposure_time": 1.0,
"number_of_frames": 2600,
"wavelength": 0.76,
"sample_detector_distance": 2.0,
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"s_min": 0.064,
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},
"fits": [
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"software": "DAMMIF",
"pdb_link": [],
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"type_of_model": "dummy",
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}
],
"fit_unit": "1/A",
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"software": "DAMMIF",
"chi_square_value": 2.836,
"p_value": 0.6884,
"fit_residual_plot": "SASDZB8_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDZB8_fit1.fir",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/Ab11_1_2_HPLC_1-global-summary.txt",
"software_version": null,
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": "SmVAL11 in complex with its cognate pAb at a 2:1 ratio was analyzed by SEC-SAXS. Spectral deconvolution was performed using Evolving Factor Analysis (EFA), revealing two distinct peaks. The present analysis focuses on the second peak.",
"experiment_description": null,
"tags": [],
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"porod_mw": 171.2,
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"pddf_i0": 1.595,
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"pddf_rg": 5.01,
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"pddf_dmax": 17.2,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDZB8_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-07-28T14:42:16.605948+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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