查看完整 summary.json 原文
{
"code": "SASDZS8",
"status": "Published",
"type_of_curve": "Merged",
"angular_unit": "1/A",
"project": {
"title": "Integrated analysis with iCM-SANS, SAXS and MD simulations for dynamics of multi-domain proteins",
"publication": {
"title": "Integrated analysis with iCM-SANS, SAXS and MD simulations for dynamics of multi-domain proteins",
"author_list": "Okuda A, Inoue R, Kurokawa M, Martel A, Porcar L, Osaki R, Fukuzawa K, Weiss K, Pingali S, Urade R, Sugiyama M",
"journal": "Journal of Applied Crystallography",
"doi": "10.1107/S1600576726005832",
"pmid": null,
"published_date": "2026 Jul 29"
},
"status": "released",
"submitted_date": "2026-05-20",
"released_date": "2026-08-05"
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"city": "Osaka",
"country": "Japan",
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{
"long_name": "Protein disulfide-isomerase A3 D122N/I124L/R363N/Y364G segmental deuterated",
"short_name": null,
"sequence": "SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTANGLVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKNGLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPVIQEEKPKKKKKAQEDL",
"organism": "Homo sapiens",
"uniprot_code": "P30101",
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"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MRLRRLALFPGVALLLAAARLAAASDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHC\nKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRT\nADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRD\nNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENI\nFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFA\nVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGN\nLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELG\nEKLSKDPNIVIAKMDATANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYL\nQREATNPPVIQEEKPKKKKKAQEDL",
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"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
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},
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"name": "Segmental deuterated Protein disulfide-isomerase A3 comprising three point mutations (D122N/I124L/R363N/Y364G; ER-60 h(a)-pd(bb’)-h(a’))",
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"contrast": null,
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"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "Kyoto University",
"webpage": null
}
],
"contributor_name": "Aya",
"contributor_surname": "Okuda",
"orcid": ""
}
],
"concentration_method": null,
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"date": "2024-09-27",
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"cell_temperature": 25.0,
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"number_of_frames": 72,
"wavelength": 1.54182,
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"description": "Two sample-to-detector distance (SDD) conditions, 1330 mm and 300 mm, were used to cover a q range (0.01-0.70 Å-1). Scattering profiles were recorded as 300 s frames, and 72 and 120 frames merged for low q (0.01-0.06 Å-1) and high q (0.06-0.70 Å-1) setups, respectively. We applied the AUC-SAS method to remove aggregation components from the profile.",
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDZS8_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-08-05T11:43:21.505535+02:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
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