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{
"code": "SASDZZ9",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "The oligomeric state of chitooligosaccharide deacetylase from the marine bacterium Vibrio campbellii.",
"publication": {
"title": "The oligomeric state of chitooligosaccharide deacetylase from the marine bacterium Vibrio campbellii.",
"author_list": "Pongnan S, Robinson RC, Kamonsutthipaijit N, Fukamizo T, Suginta W",
"journal": "Biophys Rep (N Y)",
"doi": "10.1016/j.bpr.2026.100275",
"pmid": "42341985",
"published_date": "2026 Jun 24"
},
"status": "released",
"submitted_date": "2026-06-16",
"released_date": "2026-06-29"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDZZ9.out",
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"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDZZ9_pofr_img.png",
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"experiment": {
"instrument": {
"detector": {
"type": "CCD",
"name": "Rayonix SX165",
"resolution": 15.0
},
"name": "Synchrotron Light Research Institute (SLRI)",
"city": "Nakhon Ratchasima",
"country": "Thailand",
"beamline_name": "BL1.3W",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
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"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Chito oligosaccharide deacetylase from Vibrio harveyi",
"short_name": "VhCOD",
"sequence": ">|NodB homology domain-containing protein(VhCOD)\r\nQTAPKGTIYLTFDDGPINASIDVINVLNEQGVKGTFYFNAWHLDGIGDENEDRALEALKLALDTGHVVANHSYAHMVHNCVDEFGPTSGAECNATGDHQINAYQDPVYDASTFADNLVVFERYLPNINSYPNYFGEELARLPYTNGWRITKDFKADGLCATSDDLKPWEPGYVCDLDNPSNSVKASIEVQNILANKGYQTHGWDVDWSPENWGIPMPANSLTEAEAFLGYVDAALNSCAPTTINPINSKAHGFPCGTPLHADKVVVLTHEFLYEDGKRGMGATQNLPKLAKFLRIAKEAGYVFDTIDNYTPVWQVGNAYAAGDYVTHSGTVYKAVTAHIAQQDWAPSSTSSLWTNADPATNWTLNVSYEAGDVVTYQGLRYLVNVPHVSQADWTPNTQNTLFTAL",
"organism": "Vibrio campbellii (strain ATCC BAA-1116)",
"uniprot_code": "A7MSF4",
"uniprot_range_first": 23,
"uniprot_range_last": 427,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MKLNKLAMVTLLGTALSQFSFAQTAPKGTIYLTFDDGPINASIDVINVLNEQGVKGTFYF\nNAWHLDGIGDENEDRALEALKLALDTGHVVANHSYAHMVHNCVDEFGPTSGAECNATGDH\nQINAYQDPVYDASTFADNLVVFERYLPNINSYPNYFGEELARLPYTNGWRITKDFKADGL\nCATSDDLKPWEPGYVCDLDNPSNSVKASIEVQNILANKGYQTHGWDVDWSPENWGIPMPA\nNSLTEAEAFLGYVDAALNSCAPTTINPINSKAHGFPCGTPLHADKVVVLTHEFLYEDGKR\nGMGATQNLPKLAKFLRIAKEAGYVFDTIDNYTPVWQVGNAYAAGDYVTHSGTVYKAVTAH\nIAQQDWAPSSTSSLWTNADPATNWTLNVSYEAGDVVTYQGLRYLVNVPHVSQADWTPNTQ\nNTLFTAL",
"mw": 45.0,
"total_mw": 45.0,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
"buffer": {
"name": "20 mM Tris, 100 mM NaCl",
"concentration_unit": null,
"comment": "20 mM Tris-HCl, pH 7.5, and 100 mM NaCl",
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Chitooligosaccharide deacetylase (NodB) from the marine bacterium Vibrio campbellii (VhCOD) native form",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "Vidyasirimedhi Institute of Science and Technology (VISTEC), Thailand",
"webpage": null
}
],
"contributor_name": "Sirikan",
"contributor_surname": "Pongnan",
"orcid": "https://orcid.org/0009-0004-1378-7065"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2022-12-14",
"storage_temperature": 4.0,
"cell_temperature": 16.0,
"exposure_time": 600.0,
"number_of_frames": 1,
"wavelength": 0.137,
"sample_detector_distance": 1.7,
"concentration_min": null,
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"s_min": 0.213,
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},
"fits": [
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"pdb_code": "8yfp",
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"difference_with_model": "identical"
}
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}
],
"fit_unit": "1/A",
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"software": "CRYSOL",
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},
{
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}
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"software": "DAMMIF",
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}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
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"tags": [],
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"guinier_point_first": 30,
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"intensities_log_log_plot": "SASDZZ9_datloglog_img.png",
"symmetry": null,
"last_modified": "2026-06-29T11:32:40.229497+02:00",
"bragg_peak": []
}
