10xd
Rhodococcus ruber DnaA DI
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 10xd |
| deposition_date | 2026-02-11 |
| last_revision | 2026-06-03 |
| title | Rhodococcus ruber DnaA DI |
| keywords | Initiator, DNA BINDING PROTEIN; DNA BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 14.20 Å |
| rg_electron | 12.59 Å |
| i0 | 2024730.00 |
| molecular_weight | 9789.0 kDa |
| excluded_volume | 12333 ų |
| envelope_volume | 13978 ų |
| shell_volume | 9741 ų |
| envelope_diameter | 44.4 Å |
| shell_rg | 17.99 Å |
| envelope_rg | 13.00 Å |
| shape_rg | 12.59 Å |
| total_rg | 13.89 Å |
| total_atoms | 693 |
| n_residues | 93 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 46.5 Å |
| rg_real | 14.11 Å |
| rg_real_error | 0.31 Å |
| i0_real | 2.0250e+06 |
| i0_real_error | 2.3420e+04 |
| rg_reciprocal | 14.12 Å |
| i0_reciprocal | 2025000.0000 |
| total_estimate | 0.8487 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 17.1 Å |
| skewness | 0.137 |
| kurtosis | -0.325 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 304400.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.815; Stabil: 0.997; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.592 |