11be

HIV-1 Rev Filament

Method: ELECTRON MICROSCOPY Dmax: 271.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Protein Rev

Human immunodeficiency virus 1

UniProt Q76PP8

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 155 PDB declaration: 155-meric(155) Consistent with protein copy count Chain A1; UniProt 1–116 Chain A4; UniProt 1–116 Chain A5; UniProt 1–116 Chain A9; UniProt 1–116 Chain B1; UniProt 1–116 Chain B4; UniProt 1–116 Chain B5; UniProt 1–116 Chain B9; UniProt 1–116 Chain C1; UniProt 1–116 Chain C5; UniProt 1–116 Chain C6; UniProt 1–116 Chain C9; UniProt 1–116 Chain D1; UniProt 1–116 Chain D5; UniProt 1–116 Chain D6; UniProt 1–116 Chain D9; UniProt 1–116 Chain E1; UniProt 1–116 Chain E5; UniProt 1–116 Chain E6; UniProt 1–116 Chain E9; UniProt 1–116 Chain F1; UniProt 1–116 Chain F5; UniProt 1–116 Chain F6; UniProt 1–116 Chain F9; UniProt 1–116 Chain G1; UniProt 1–116 Chain G5; UniProt 1–116 Chain G6; UniProt 1–116 Chain G9; UniProt 1–116 Chain H1; UniProt 1–116 Chain H5; UniProt 1–116 Chain H6; UniProt 1–116 Chain H9; UniProt 1–116 Chain I1; UniProt 1–116 Chain I4; UniProt 1–116 Chain I9; UniProt 1–116 Chain J1; UniProt 1–116 Chain J4; UniProt 1–116 Chain J9; UniProt 1–116 Chain K1; UniProt 1–116 Chain K4; UniProt 1–116 Chain K9; UniProt 1–116 Chain L1; UniProt 1–116 Chain L4; UniProt 1–116 Chain L9; UniProt 1–116 Chain M1; UniProt 1–116 Chain M4; UniProt 1–116 Chain M5; UniProt 1–116 Chain M9; UniProt 1–116 Chain N1; UniProt 1–116 Chain N4; UniProt 1–116 Chain N5; UniProt 1–116 Chain N9; UniProt 1–116 Chain O1; UniProt 1–116 Chain O4; UniProt 1–116 Chain O5; UniProt 1–116 Chain O9; UniProt 1–116 Chain P1; UniProt 1–116 Chain P5; UniProt 1–116 Chain P9; UniProt 1–116 Chain R1; UniProt 1–116 Chain R4; UniProt 1–116 Chain R9; UniProt 1–116 Chain S1; UniProt 1–116 Chain S4; UniProt 1–116 Chain S9; UniProt 1–116 Chain T1; UniProt 1–116 Chain T4; UniProt 1–116 Chain T5; UniProt 1–116 Chain T9; UniProt 1–116 Chain U1; UniProt 1–116 Chain U4; UniProt 1–116 Chain U5; UniProt 1–116 Chain U9; UniProt 1–116 Chain V1; UniProt 1–116 Chain V5; UniProt 1–116 Chain V6; UniProt 1–116 Chain V9; UniProt 1–116 Chain W1; UniProt 1–116 Chain W5; UniProt 1–116 Chain W6; UniProt 1–116 Chain W9; UniProt 1–116 Chain X1; UniProt 1–116 Chain X5; UniProt 1–116 Chain X6; UniProt 1–116 Chain X9; UniProt 1–116 Chain Y1; UniProt 1–116 Chain Y5; UniProt 1–116 Chain Y6; UniProt 1–116 Chain Y9; UniProt 1–116 Chain a3; UniProt 1–116 Chain a7; UniProt 1–116 Chain a8; UniProt 1–116 Chain b3; UniProt 1–116 Chain b7; UniProt 1–116 Chain b8; UniProt 1–116 Chain c2; UniProt 1–116 Chain c7; UniProt 1–116 Chain c8; UniProt 1–116 Chain d2; UniProt 1–116 Chain d7; UniProt 1–116 Chain d8; UniProt 1–116 Chain e2; UniProt 1–116 Chain e7; UniProt 1–116 Chain e8; UniProt 1–116 Chain f2; UniProt 1–116 Chain f7; UniProt 1–116 Chain f8; UniProt 1–116 Chain g2; UniProt 1–116 Chain g7; UniProt 1–116 Chain g8; UniProt 1–116 Chain h2; UniProt 1–116 Chain h7; UniProt 1–116 Chain h8; UniProt 1–116 Chain i3; UniProt 1–116 Chain i7; UniProt 1–116 Chain j3; UniProt 1–116 Chain j7; UniProt 1–116 Chain k3; UniProt 1–116 Chain k7; UniProt 1–116 Chain l3; UniProt 1–116 Chain l7; UniProt 1–116 Chain m3; UniProt 1–116 Chain m7; UniProt 1–116 Chain m8; UniProt 1–116 Chain n3; UniProt 1–116 Chain n7; UniProt 1–116 Chain n8; UniProt 1–116 Chain o3; UniProt 1–116 Chain o7; UniProt 1–116 Chain o8; UniProt 1–116 Chain p3; UniProt 1–116 Chain p7; UniProt 1–116 Chain p8; UniProt 1–116 Chain r3; UniProt 1–116 Chain r7; UniProt 1–116 Chain s3; UniProt 1–116 Chain s7; UniProt 1–116 Chain t3; UniProt 1–116 Chain t7; UniProt 1–116 Chain t8; UniProt 1–116 Chain u3; UniProt 1–116 Chain u7; UniProt 1–116 Chain u8; UniProt 1–116 Chain v2; UniProt 1–116 Chain v7; UniProt 1–116 Chain v8; UniProt 1–116 Chain w2; UniProt 1–116 Chain w7; UniProt 1–116 Chain w8; UniProt 1–116 Chain x2; UniProt 1–116 Chain x7; UniProt 1–116 Chain x8; UniProt 1–116 Chain y2; UniProt 1–116 Chain y7; UniProt 1–116 Chain y8; UniProt 1–116 Not recorded No other associated polymer ELECTRON MICROSCOPY cryo-EM buffer:pH 7 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 8.30 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

6 other PDB entries and 8 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q76PP8_HV1
Isoform
PDB entities 1
Chains and sequence ranges Author chain A1; PDBConstruct 1–116; UniProt 1–116 Author chain A4; PDBConstruct 1–116; UniProt 1–116 Author chain A5; PDBConstruct 1–116; UniProt 1–116 Author chain A9; PDBConstruct 1–116; UniProt 1–116 Author chain B1; PDBConstruct 1–116; UniProt 1–116 Author chain B4; PDBConstruct 1–116; UniProt 1–116 Author chain B5; PDBConstruct 1–116; UniProt 1–116 Author chain B9; PDBConstruct 1–116; UniProt 1–116 Author chain C1; PDBConstruct 1–116; UniProt 1–116 Author chain C5; PDBConstruct 1–116; UniProt 1–116 Author chain C6; PDBConstruct 1–116; UniProt 1–116 Author chain C9; PDBConstruct 1–116; UniProt 1–116 Author chain D1; PDBConstruct 1–116; UniProt 1–116 Author chain D5; PDBConstruct 1–116; UniProt 1–116 Author chain D6; PDBConstruct 1–116; UniProt 1–116 Author chain D9; PDBConstruct 1–116; UniProt 1–116 Author chain E1; PDBConstruct 1–116; UniProt 1–116 Author chain E5; PDBConstruct 1–116; UniProt 1–116 Author chain E6; PDBConstruct 1–116; UniProt 1–116 Author chain E9; PDBConstruct 1–116; UniProt 1–116 Author chain F1; PDBConstruct 1–116; UniProt 1–116 Author chain F5; PDBConstruct 1–116; UniProt 1–116 Author chain F6; PDBConstruct 1–116; UniProt 1–116 Author chain F9; PDBConstruct 1–116; UniProt 1–116 Author chain G1; PDBConstruct 1–116; UniProt 1–116 Author chain G5; PDBConstruct 1–116; UniProt 1–116 Author chain G6; PDBConstruct 1–116; UniProt 1–116 Author chain G9; PDBConstruct 1–116; UniProt 1–116 Author chain H1; PDBConstruct 1–116; UniProt 1–116 Author chain H5; PDBConstruct 1–116; UniProt 1–116 Author chain H6; PDBConstruct 1–116; UniProt 1–116 Author chain H9; PDBConstruct 1–116; UniProt 1–116 Author chain I1; PDBConstruct 1–116; UniProt 1–116 Author chain I4; PDBConstruct 1–116; UniProt 1–116 Author chain I9; PDBConstruct 1–116; UniProt 1–116 Author chain J1; PDBConstruct 1–116; UniProt 1–116 Author chain J4; PDBConstruct 1–116; UniProt 1–116 Author chain J9; PDBConstruct 1–116; UniProt 1–116 Author chain K1; PDBConstruct 1–116; UniProt 1–116 Author chain K4; PDBConstruct 1–116; UniProt 1–116 Author chain K9; PDBConstruct 1–116; UniProt 1–116 Author chain L1; PDBConstruct 1–116; UniProt 1–116 Author chain L4; PDBConstruct 1–116; UniProt 1–116 Author chain L9; PDBConstruct 1–116; UniProt 1–116 Author chain M1; PDBConstruct 1–116; UniProt 1–116 Author chain M4; PDBConstruct 1–116; UniProt 1–116 Author chain M5; PDBConstruct 1–116; UniProt 1–116 Author chain M9; PDBConstruct 1–116; UniProt 1–116 Author chain N1; PDBConstruct 1–116; UniProt 1–116 Author chain N4; PDBConstruct 1–116; UniProt 1–116 Author chain N5; PDBConstruct 1–116; UniProt 1–116 Author chain N9; PDBConstruct 1–116; UniProt 1–116 Author chain O1; PDBConstruct 1–116; UniProt 1–116 Author chain O4; PDBConstruct 1–116; UniProt 1–116 Author chain O5; PDBConstruct 1–116; UniProt 1–116 Author chain O9; PDBConstruct 1–116; UniProt 1–116 Author chain P1; PDBConstruct 1–116; UniProt 1–116 Author chain P5; PDBConstruct 1–116; UniProt 1–116 Author chain P9; PDBConstruct 1–116; UniProt 1–116 Author chain R1; PDBConstruct 1–116; UniProt 1–116 Author chain R4; PDBConstruct 1–116; UniProt 1–116 Author chain R9; PDBConstruct 1–116; UniProt 1–116 Author chain S1; PDBConstruct 1–116; UniProt 1–116 Author chain S4; PDBConstruct 1–116; UniProt 1–116 Author chain S9; PDBConstruct 1–116; UniProt 1–116 Author chain T1; PDBConstruct 1–116; UniProt 1–116 Author chain T4; PDBConstruct 1–116; UniProt 1–116 Author chain T5; PDBConstruct 1–116; UniProt 1–116 Author chain T9; PDBConstruct 1–116; UniProt 1–116 Author chain U1; PDBConstruct 1–116; UniProt 1–116 Author chain U4; PDBConstruct 1–116; UniProt 1–116 Author chain U5; PDBConstruct 1–116; UniProt 1–116 Author chain U9; PDBConstruct 1–116; UniProt 1–116 Author chain V1; PDBConstruct 1–116; UniProt 1–116 Author chain V5; PDBConstruct 1–116; UniProt 1–116 Author chain V6; PDBConstruct 1–116; UniProt 1–116 Author chain V9; PDBConstruct 1–116; UniProt 1–116 Author chain W1; PDBConstruct 1–116; UniProt 1–116 Author chain W5; PDBConstruct 1–116; UniProt 1–116 Author chain W6; PDBConstruct 1–116; UniProt 1–116 Author chain W9; PDBConstruct 1–116; UniProt 1–116 Author chain X1; PDBConstruct 1–116; UniProt 1–116 Author chain X5; PDBConstruct 1–116; UniProt 1–116 Author chain X6; PDBConstruct 1–116; UniProt 1–116 Author chain X9; PDBConstruct 1–116; UniProt 1–116 Author chain Y1; PDBConstruct 1–116; UniProt 1–116 Author chain Y5; PDBConstruct 1–116; UniProt 1–116 Author chain Y6; PDBConstruct 1–116; UniProt 1–116 Author chain Y9; PDBConstruct 1–116; UniProt 1–116 Author chain a3; PDBConstruct 1–116; UniProt 1–116 Author chain a7; PDBConstruct 1–116; UniProt 1–116 Author chain a8; PDBConstruct 1–116; UniProt 1–116 Author chain b3; PDBConstruct 1–116; UniProt 1–116 Author chain b7; PDBConstruct 1–116; UniProt 1–116 Author chain b8; PDBConstruct 1–116; UniProt 1–116 Author chain c2; PDBConstruct 1–116; UniProt 1–116 Author chain c7; PDBConstruct 1–116; UniProt 1–116 Author chain c8; PDBConstruct 1–116; UniProt 1–116 Author chain d2; PDBConstruct 1–116; UniProt 1–116 Author chain d7; PDBConstruct 1–116; UniProt 1–116 Author chain d8; PDBConstruct 1–116; UniProt 1–116 Author chain e2; PDBConstruct 1–116; UniProt 1–116 Author chain e7; PDBConstruct 1–116; UniProt 1–116 Author chain e8; PDBConstruct 1–116; UniProt 1–116 Author chain f2; PDBConstruct 1–116; UniProt 1–116 Author chain f7; PDBConstruct 1–116; UniProt 1–116 Author chain f8; PDBConstruct 1–116; UniProt 1–116 Author chain g2; PDBConstruct 1–116; UniProt 1–116 Author chain g7; PDBConstruct 1–116; UniProt 1–116 Author chain g8; PDBConstruct 1–116; UniProt 1–116 Author chain h2; PDBConstruct 1–116; UniProt 1–116 Author chain h7; PDBConstruct 1–116; UniProt 1–116 Author chain h8; PDBConstruct 1–116; UniProt 1–116 Author chain i3; PDBConstruct 1–116; UniProt 1–116 Author chain i7; PDBConstruct 1–116; UniProt 1–116 Author chain j3; PDBConstruct 1–116; UniProt 1–116 Author chain j7; PDBConstruct 1–116; UniProt 1–116 Author chain k3; PDBConstruct 1–116; UniProt 1–116 Author chain k7; PDBConstruct 1–116; UniProt 1–116 Author chain l3; PDBConstruct 1–116; UniProt 1–116 Author chain l7; PDBConstruct 1–116; UniProt 1–116 Author chain m3; PDBConstruct 1–116; UniProt 1–116 Author chain m7; PDBConstruct 1–116; UniProt 1–116 Author chain m8; PDBConstruct 1–116; UniProt 1–116 Author chain n3; PDBConstruct 1–116; UniProt 1–116 Author chain n7; PDBConstruct 1–116; UniProt 1–116 Author chain n8; PDBConstruct 1–116; UniProt 1–116 Author chain o3; PDBConstruct 1–116; UniProt 1–116 Author chain o7; PDBConstruct 1–116; UniProt 1–116 Author chain o8; PDBConstruct 1–116; UniProt 1–116 Author chain p3; PDBConstruct 1–116; UniProt 1–116 Author chain p7; PDBConstruct 1–116; UniProt 1–116 Author chain p8; PDBConstruct 1–116; UniProt 1–116 Author chain r3; PDBConstruct 1–116; UniProt 1–116 Author chain r7; PDBConstruct 1–116; UniProt 1–116 Author chain s3; PDBConstruct 1–116; UniProt 1–116 Author chain s7; PDBConstruct 1–116; UniProt 1–116 Author chain t3; PDBConstruct 1–116; UniProt 1–116 Author chain t7; PDBConstruct 1–116; UniProt 1–116 Author chain t8; PDBConstruct 1–116; UniProt 1–116 Author chain u3; PDBConstruct 1–116; UniProt 1–116 Author chain u7; PDBConstruct 1–116; UniProt 1–116 Author chain u8; PDBConstruct 1–116; UniProt 1–116 Author chain v2; PDBConstruct 1–116; UniProt 1–116 Author chain v7; PDBConstruct 1–116; UniProt 1–116 Author chain v8; PDBConstruct 1–116; UniProt 1–116 Author chain w2; PDBConstruct 1–116; UniProt 1–116 Author chain w7; PDBConstruct 1–116; UniProt 1–116 Author chain w8; PDBConstruct 1–116; UniProt 1–116 Author chain x2; PDBConstruct 1–116; UniProt 1–116 Author chain x7; PDBConstruct 1–116; UniProt 1–116 Author chain x8; PDBConstruct 1–116; UniProt 1–116 Author chain y2; PDBConstruct 1–116; UniProt 1–116 Author chain y7; PDBConstruct 1–116; UniProt 1–116 Author chain y8; PDBConstruct 1–116; UniProt 1–116

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 11be

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 11be
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2. Structure Basics 2. Structure Basics

Entry ID entry_id11be
Deposition date deposition_date2026-02-15
Structure title titleHIV-1 Rev Filament
Keywords keywordsHIV-1, Rev, Filament, Rev Response Element, RNA, RNA binding protein, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier97.75
Radius of gyration Rg (electron density) rg_electron96.88
Forward intensity I(0) i017708300000.00
Molecular weight molecular_weight1079900.0 kDa
Excluded volume excluded_volume1341500 ų
Envelope volume envelope_volume3301900 ų
Hydration-shell volume shell_volume296770 ų
Envelope diameter envelope_diameter331.7
Shell Rg shell_rg91.90
Envelope Rg envelope_rg90.72
Shape Rg shape_rg96.86
Total Rg total_rg96.87
Total atoms total_atoms76260
Residues n_residues8680
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax271.1
Rg (real space) rg_real95.16
Rg uncertainty (real space) rg_real_error0.90
I(0) (real space) i0_real1.7050e+10
I(0) uncertainty (real space) i0_real_error3.4190e+08
Rg (reciprocal space) rg_reciprocal96.94
I(0) (reciprocal space) i0_reciprocal17660000000.0000
Solution quality estimate total_estimate0.8841
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary118.6
Skewness Skewness skewness0.359
Kurtosis Kurtosis kurtosis-0.274
Angular range angular_range— – 0.0800 −1
Current regularization parameter α current_alpha0.9271
Highest regularization parameter α highest_alpha5665000000.0000
Real-space data points n_real_points17
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.001; Oscil: 0.875; Stabil: 0.952; Sysdev: 1.000; Positv: 1.000; Valcen: 0.965; Smooth: 0.050

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

8. Citations (1)

9. Files and Curves (10)