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16vp

CONSERVED CORE OF THE HERPES SIMPLEX VIRUS TRANSCRIPTIONAL REGULATORY PROTEIN VP16

Method: X-RAY DIFFRACTION D_max: 86.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	16vp
deposition_date	1999-02-11
title	CONSERVED CORE OF THE HERPES SIMPLEX VIRUS TRANSCRIPTIONAL REGULATORY PROTEIN VP16
keywords	TRANSCRIPTIONAL REGULATORY PROTEIN; TRANSCRIPTIONAL REGULATORY PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	23.69 Å
rg_electron	22.73 Å
i0	21266400.00
molecular_weight	35052.0 kDa
excluded_volume	43844 Å³
envelope_volume	51136 Å³
shell_volume	20264 Å³
envelope_diameter	87.9 Å
shell_rg	27.72 Å
envelope_rg	23.10 Å
shape_rg	22.68 Å
total_rg	23.53 Å
total_atoms	2467
n_residues	311
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	86.9 Å
rg_real	23.90 Å
rg_real_error	0.90 Å
i0_real	2.1270e+07
i0_real_error	3.5760e+05
rg_reciprocal	23.85 Å
i0_reciprocal	21270000.0000
total_estimate	0.8136
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	24.4 Å
skewness	0.621
kurtosis	0.111
angular_range	— – 0.3350 Å⁻¹
current_alpha	0.0000
highest_alpha	4103000.0000
n_real_points	65
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.626; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.700; Smooth: 0.994

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	PROTEIN (VP16, VMW65, ATIF)
formula_weight	41480.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2637

SRMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDAYVPERTQIDIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALYRYLRASVRQLHRQAHMRGRDRDLGEMLRATIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDCLCCDLESWRQLAGLFQPFMFVNGALTVRGVPIEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTPPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMREHAYSRAPTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFLPAGHTRRLST

Source

organism	Human herpesvirus 1
common_name	Herpes simplex virus type 1
ncbi_taxonomy_id	10298
host_organism	Escherichia coli

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	2

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	170

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6. Citations (1)

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length_a	59.500 Å
length_b	77.100 Å
length_c	84.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.100 Å
resolution_low	7.000 Å
r_factor	—
r_work	0.1920
r_free	0.2600

fit	/app/data/saxs_computation/6v/16vp/16vp.fit
pddf	/app/data/pr_computation/6v/16vp/16vp.pr.out
profile	/app/data/saxs_computation/6v/16vp/16vp.dat

CONSERVED CORE OF THE HERPES SIMPLEX VIRUS TRANSCRIPTIONAL REGULATORY PROTEIN VP16

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction