SAXSdb — 1a34

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1. 蛋白身份与相关结构 Protein Identity & Related Structures

SATELLITE TOBACCO MOSAIC VIRUS

Satellite Tobacco Mosaic Virus

当前结构中的状态

Assembly	聚集状态	构建体	突变与修饰	配体、离子与共同组分	实验方法与环境	结构质量
1	蛋白–RNA 同源多聚体蛋白 × 60 RNA 120 PDB 声明：180-MERIC（180）与全部聚合物数一致	链 A； UniProt 1–159	未记录	;RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3') ; × 60 ;RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3') ; × 60 SO4 SULFATE ION × 60 U5P URIDINE-5'-MONOPHOSPHATE × 60	X-RAY DIFFRACTION X-ray结晶条件：liquid diffusion in microgravity；pH 6.5；PROTEIN WAS FOUR TIMES RECRYSTALLIZED FROM BULK SOLUTION BY ADDITION AF AMMONIUM SULFATE TO 15% SATURATION. SPACE CRYSTALS WERE GROWN BY LIQUID-LIQUID DIFFUSION IN A MICROGRAVITY ENVIRONMENT OVER 12 DAYS ABOARD IML-I MISSION OF THE US SPACE SHUTTLE., pH 6.50, liquid diffusion in microgravity	分辨率 1.81 Å R-free 0.184
2	蛋白–RNA 单体蛋白 × 1 RNA 2 PDB 声明：trimeric（3）与全部聚合物数一致	链 A； UniProt 1–159	未记录	;RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3') ; × 1 ;RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3') ; × 1 SO4 SULFATE ION × 1 U5P URIDINE-5'-MONOPHOSPHATE × 1	X-RAY DIFFRACTION X-ray结晶条件：liquid diffusion in microgravity；pH 6.5；PROTEIN WAS FOUR TIMES RECRYSTALLIZED FROM BULK SOLUTION BY ADDITION AF AMMONIUM SULFATE TO 15% SATURATION. SPACE CRYSTALS WERE GROWN BY LIQUID-LIQUID DIFFUSION IN A MICROGRAVITY ENVIRONMENT OVER 12 DAYS ABOARD IML-I MISSION OF THE US SPACE SHUTTLE., pH 6.50, liquid diffusion in microgravity	分辨率 1.81 Å R-free 0.184
3	蛋白–RNA 同源多聚体蛋白 × 5 RNA 10 PDB 声明：pentadecameric（15）与全部聚合物数一致	链 A； UniProt 1–159	未记录	;RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3') ; × 5 ;RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3') ; × 5 SO4 SULFATE ION × 5 U5P URIDINE-5'-MONOPHOSPHATE × 5	X-RAY DIFFRACTION X-ray结晶条件：liquid diffusion in microgravity；pH 6.5；PROTEIN WAS FOUR TIMES RECRYSTALLIZED FROM BULK SOLUTION BY ADDITION AF AMMONIUM SULFATE TO 15% SATURATION. SPACE CRYSTALS WERE GROWN BY LIQUID-LIQUID DIFFUSION IN A MICROGRAVITY ENVIRONMENT OVER 12 DAYS ABOARD IML-I MISSION OF THE US SPACE SHUTTLE., pH 6.50, liquid diffusion in microgravity	分辨率 1.81 Å R-free 0.184
4	蛋白–RNA 同源多聚体蛋白 × 6 RNA 12 PDB 声明：octadecameric（18）与全部聚合物数一致	链 A； UniProt 1–159	未记录	;RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3') ; × 6 ;RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3') ; × 6 SO4 SULFATE ION × 6 U5P URIDINE-5'-MONOPHOSPHATE × 6	X-RAY DIFFRACTION X-ray结晶条件：liquid diffusion in microgravity；pH 6.5；PROTEIN WAS FOUR TIMES RECRYSTALLIZED FROM BULK SOLUTION BY ADDITION AF AMMONIUM SULFATE TO 15% SATURATION. SPACE CRYSTALS WERE GROWN BY LIQUID-LIQUID DIFFUSION IN A MICROGRAVITY ENVIRONMENT OVER 12 DAYS ABOARD IML-I MISSION OF THE US SPACE SHUTTLE., pH 6.50, liquid diffusion in microgravity	分辨率 1.81 Å R-free 0.184
5	蛋白–RNA 单体蛋白 × 1 RNA 2 PDB 声明：trimeric（3）与全部聚合物数一致	链 A； UniProt 1–159	未记录	;RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3') ; × 1 ;RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3') ; × 1 SO4 SULFATE ION × 1 U5P URIDINE-5'-MONOPHOSPHATE × 1	X-RAY DIFFRACTION X-ray结晶条件：liquid diffusion in microgravity；pH 6.5；PROTEIN WAS FOUR TIMES RECRYSTALLIZED FROM BULK SOLUTION BY ADDITION AF AMMONIUM SULFATE TO 15% SATURATION. SPACE CRYSTALS WERE GROWN BY LIQUID-LIQUID DIFFUSION IN A MICROGRAVITY ENVIRONMENT OVER 12 DAYS ABOARD IML-I MISSION OF THE US SPACE SHUTTLE., pH 6.50, liquid diffusion in microgravity	分辨率 1.81 Å R-free 0.184
6	蛋白–RNA 同源多聚体蛋白 × 15 RNA 30 PDB 声明：45-meric（45）与全部聚合物数一致	链 A； UniProt 1–159	未记录	;RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3') ; × 15 ;RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3') ; × 15 SO4 SULFATE ION × 15 U5P URIDINE-5'-MONOPHOSPHATE × 15	X-RAY DIFFRACTION X-ray结晶条件：liquid diffusion in microgravity；pH 6.5；PROTEIN WAS FOUR TIMES RECRYSTALLIZED FROM BULK SOLUTION BY ADDITION AF AMMONIUM SULFATE TO 15% SATURATION. SPACE CRYSTALS WERE GROWN BY LIQUID-LIQUID DIFFUSION IN A MICROGRAVITY ENVIRONMENT OVER 12 DAYS ABOARD IML-I MISSION OF THE US SPACE SHUTTLE., pH 6.50, liquid diffusion in microgravity	分辨率 1.81 Å R-free 0.184

数据库中的同蛋白其他状态

以下每一行都是同一 UniProt 蛋白在另一个 PDB 条目中的 biological assembly， “相对当前条目”直接指出证据层面的不同；没有差异标签表示当前已读取字段一致。

其他 PDB	相对当前条目 1A34	Assembly / 聚集状态	构建体	突变与修饰	配体、离子与非聚合物	实验方法与环境	结构质量
4NIA Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints 提交 2013-11-05	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：240-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 H 1–159（159 aa）链 I 1–159（159 aa）链 J 1–159（159 aa）链 K 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	MG MAGNESIUM ION × 12 PO4 PHOSPHATE ION × 12 SO4 SULFATE ION × 4	X-RAY DIFFRACTION X-ray结晶条件 LIQUID DIFFUSION；pH 6.5；296 K；9 crystals were grown in microgravity aboard IML-I mission of the U.S. Space Shuttle over 12 days using 20% ammonium sulfate as precipitant, pH 6.50, LIQUID DIFFUSION, temperature 296K X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；12 crystals grown from 8% ammonium sulfate on earth with a reservoir of 14-16% ammonium sulfate, pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.82 Å R-free 0.156
4OQ8 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints 提交 2014-02-07	聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：240-meric	链 A 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 60 SO4 SULFATE ION × 120 MG MAGNESIUM ION × 60	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.279
4OQ8 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints 提交 2014-02-07	聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 2 蛋白–RNA 单体；蛋白 × 1 PDB 声明：tetrameric	链 A 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 1 SO4 SULFATE ION × 2 MG MAGNESIUM ION × 1	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.279
4OQ8 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints 提交 2014-02-07	聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 3 蛋白–RNA 同源多聚体；蛋白 × 5 PDB 声明：eicosameric	链 A 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 5 SO4 SULFATE ION × 10 MG MAGNESIUM ION × 5	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.279
4OQ8 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints 提交 2014-02-07	聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 4 蛋白–RNA 同源多聚体；蛋白 × 6 PDB 声明：24-meric	链 A 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 6 SO4 SULFATE ION × 12 MG MAGNESIUM ION × 6	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.279
4OQ8 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints 提交 2014-02-07	聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 5 蛋白–RNA 单体；蛋白 × 1 PDB 声明：tetrameric	链 A 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 1 SO4 SULFATE ION × 2 MG MAGNESIUM ION × 1	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.279
4OQ8 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints 提交 2014-02-07	聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 6 蛋白–RNA 同源多聚体；蛋白 × 15 PDB 声明：60-meric	链 A 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 15 SO4 SULFATE ION × 30 MG MAGNESIUM ION × 15	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.279
4OQ9 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints 提交 2014-02-07	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：240-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 H 1–159（159 aa）链 I 1–159（159 aa）链 J 1–159（159 aa）链 K 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 12 SO4 SULFATE ION × 72 NA SODIUM ION × 68 MG MAGNESIUM ION × 12	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.250
4OQ9 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints 提交 2014-02-07	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 2 蛋白–RNA 同源多聚体；蛋白 × 15 PDB 声明：60-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 H 1–159（159 aa）链 I 1–159（159 aa）链 J 1–159（159 aa）链 K 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 3 SO4 SULFATE ION × 18 NA SODIUM ION × 17 MG MAGNESIUM ION × 3	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.250
4OQ9 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints 提交 2014-02-07	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 3 蛋白–RNA 同源多聚体；蛋白 × 15 PDB 声明：60-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 H 1–159（159 aa）链 I 1–159（159 aa）链 J 1–159（159 aa）链 K 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 3 SO4 SULFATE ION × 18 NA SODIUM ION × 17 MG MAGNESIUM ION × 3	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.250
4OQ9 Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints 提交 2014-02-07	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 4 蛋白–RNA 同源多聚体；蛋白 × 15 PDB 声明：60-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 H 1–159（159 aa）链 I 1–159（159 aa）链 J 1–159（159 aa）链 K 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 3 SO4 SULFATE ION × 18 NA SODIUM ION × 17 MG MAGNESIUM ION × 3	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；296 K；crystals grown from 15% ammonium sulfate on earth with a reservoir of 15% ammonium sulfate over 14 days., pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 296K	分辨率 1.45 Å R-free 0.250
5BKL Crystallographic structure of the cubic crystal form of STMV (77.9 degree rotation) grown from NaCl 提交 2021-03-20	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：117-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	CL CHLORIDE ION × 120 MG MAGNESIUM ION × 39	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6；279 K；Crystals were grown by sitting drop vapor diffusion in Cryschem plates using 0.6 ml reservoirs. The drops were composed of equal amounts of a 5 mg/ml stock virus solution buffered at pH6.5 with 0.1 M phosphate, and the reservoir solution which was 8% w/v NaCl buffered with 0.1 M phosphate at pH 6.0. Crystallization was carried out at 4 degrees C.	分辨率 2.94 Å R-free 0.256
5BKN Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride 提交 2021-03-20	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：117-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	CL CHLORIDE ION × 78 MG MAGNESIUM ION × 42	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6；279 K；Crystals were grown by sitting drop vapor diffusion in Cryschem plates using .6 ml reservoirs. The drops were composed of equal volumes of a 5 mg/ml virus stock solution of 0.1 M phosphate at pH 6.5, and the reservoir solution, which was 8% NaCl w/v in 0.1 M phosphate at pH 6.0. Crystallization was at 4 degrees C.	分辨率 3.00 Å R-free 0.255
5BKQ Crystallographic structure of a cubic form of STMV grown from nitrate 提交 2021-03-21	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 60 PDB 声明：60-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	NO3 NITRATE ION × 306 MG MAGNESIUM ION × 27	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6；279 K；Crystals were grown by sitting drop vapor diffusion in Cryschem plates using 0.6 ml reservoirs. Drops were equal amounts of a 5 mg/ml virus stock solution buffered with 0.1 M phosphate at pH 6.5, and the reservoir solution which was 20% w/v sodium nitrate in 0.1 M phosphate at pH 6.0. Crystallization was carried out at 4 degrees C.	分辨率 3.19 Å R-free 0.273
7M2T Crystallographic Structure of the Monoclinic Form of Satellite Tobacco Mosaic Virus 提交 2021-03-17	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：218-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 BB 1–159（159 aa）链 C 1–159（159 aa）链 CC 1–159（159 aa）链 D 1–159（159 aa）链 DD 1–159（159 aa）链 E 1–159（159 aa）链 EE 1–159（159 aa）链 F 1–159（159 aa）链 FF 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 LL 1–159（159 aa）链 M 1–159（159 aa）链 MM 1–159（159 aa）链 N 1–159（159 aa）链 NN 1–159（159 aa）链 O 1–159（159 aa）链 OO 1–159（159 aa）链 PP 1–159（159 aa）	未记录	MG MAGNESIUM ION × 12 PO4 PHOSPHATE ION × 12 SO4 SULFATE ION × 10	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6.5；279 K；Crystals grown by vapor diffusion as sitting drops. Drops were equal volumes of a 6 mg/ml STMV stock solution buffered at pH 6.5 with 0.1 M phosphate. The reservoirs were 16% saturated ammonium sulfate in 0.1 M phosphate at pH 6.5. Drops were 6 to 8 ul with 0.60 ml reservoirs. Crystals were grown at 4 degrees C over a weeks time.	分辨率 2.71 Å R-free 0.177
7M2V Crystallographic Structure of the Rhombohedral Crystal Form of STMV Grown from Chloride 提交 2021-03-17	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：120-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 FX 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 NN 1–159（159 aa）链 O 1–159（159 aa）	未记录	CL CHLORIDE ION × 39 MG MAGNESIUM ION × 24 PO4 PHOSPHATE ION × 12	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6；279 K；Crystals grown by sitting drop vapor diffusion in Cryschem plates with 0.6 ml reservoirs and 6 to 8 ul drops. Drops were equal amounts of a 5 mg/ml virus stock solution buffered at pH 6.5 with 0.1 M phosphate, and the reservoir solution. The reservoir solution was 4% w/v NaCl in 0.1 M phosphate at pH 6.0. Crystallization was at 4 degrees C.	分辨率 1.80 Å R-free 0.217
7M3R Crystallographic Structure of the Rhombohedral Crystal Form of STMV Grown from Bromide 提交 2021-03-18	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 60 PDB 声明：60-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	BR BROMIDE ION × 573 MG MAGNESIUM ION × 24	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6；279 K；Crystals were grown by sitting drop vapor diffusion in Cryschem plates with 0.6 ml reservoirs and 6 to 8 ul drops. The drops were equal amounts of a 5 mg/ml virus stock solution buffered at pH 6.5 with 0.1 M phosphate. The reservoirs were 5% w/v NaBr in 0.1 M phosphate at pH 6.0. Crystallization was at 4 degrees C and the time of development was about 10 days.	分辨率 2.10 Å R-free 0.208
7M3T Crystallographic structure of a cubic crystal of STMV (80.7 degree rotation about 111) grown from chloride 提交 2021-03-19	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：117-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 21 CL CHLORIDE ION × 42 MG MAGNESIUM ION × 18	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6；279 K；Crystals were grown by sitting drop vapor diffusion in Cryschem plates using 0.6 ml reservoirs. The drops were equal volumes of 5 mg/ml STMV in 0.1 M phosphate at pH 6.5 and the reservoir solution, which was 8% w/v NaCl in 0.1 M phosphate at pH 6.0. Crystallization was carried out at 4 degrees C.	分辨率 3.20 Å R-free 0.254
7M50 Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate 提交 2021-03-22	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：117-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 15 MG MAGNESIUM ION × 15 CL CHLORIDE ION × 3 SO4 SULFATE ION × 18	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6；279 K；Crystals were grown by sitting drop vapor diffusion in Cryschem plates using 0.6 ml reservoirs. Drops were 6 to 8 ul and were composed of equal volumes of a 5 mg/ml virus stock solution containing 0.1 M phosphate at pH 6.5, and the reservoir solution. The reservoir solution was 18% ammonium sulfate in 0.1 M phosphate at pH 6.0. Crystallization was carried out at 4 degrees C.	分辨率 2.31 Å R-free 0.271
7M54 Crystallographic structure of a cubic crystal form of STMV grown from bromide 提交 2021-03-22	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白同源多聚体同源多聚体；蛋白 × 60 PDB 声明：60-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 C 1–159（159 aa）链 D 1–159（159 aa）链 E 1–159（159 aa）链 F 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 M 1–159（159 aa）链 N 1–159（159 aa）链 O 1–159（159 aa）	未记录	CA CALCIUM ION × 18 BR BROMIDE ION × 546 MG MAGNESIUM ION × 27 CL CHLORIDE ION × 9	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6；279 K；crystals were grown by sitting drop vapor diffusion in Cryschem plates using 0.6 ml reservoirs. Drops were 6 to 8 ul and composed of equal volumes of a 5 mg/ml virus stock solution buffered at pH 6.5 with 0.1M phosphate, and the reservoir solution. The reservoir solution was 18% w/v NaBr buffered with 0.1 M phosphate at pH 6.0. Crystallization was carried out at 4 degrees C.	分辨率 3.80 Å R-free 0.285
7M57 Crystallographic structure of a primitive orthorhombic crystal form of STMV 提交 2021-03-22	构建体不同突变/修饰不同聚集状态不同配体/离子不同实验环境不同结构质量不同	Assembly 1 蛋白–RNA 同源多聚体；蛋白 × 60 PDB 声明：218-meric	链 A 1–159（159 aa）链 B 1–159（159 aa）链 BB 1–159（159 aa）链 C 1–159（159 aa）链 CC 1–159（159 aa）链 D 1–159（159 aa）链 DD 1–159（159 aa）链 E 1–159（159 aa）链 EE 1–159（159 aa）链 F 1–159（159 aa）链 FF 1–159（159 aa）链 G 1–159（159 aa）链 GG 1–159（159 aa）链 H 1–159（159 aa）链 HH 1–159（159 aa）链 I 1–159（159 aa）链 II 1–159（159 aa）链 J 1–159（159 aa）链 JJ 1–159（159 aa）链 K 1–159（159 aa）链 KK 1–159（159 aa）链 L 1–159（159 aa）链 LL 1–159（159 aa）链 M 1–159（159 aa）链 MM 1–159（159 aa）链 N 1–159（159 aa）链 NN 1–159（159 aa）链 O 1–159（159 aa）链 OO 1–159（159 aa）链 PP 1–159（159 aa）	未记录	PO4 PHOSPHATE ION × 12	X-RAY DIFFRACTION X-ray结晶条件 VAPOR DIFFUSION, SITTING DROP；pH 6；298 K；Crystals were grown by sitting drop vapor diffusion in Cryschem plates using 0.6 ml reservoirs. The drops were 6 to 8 ul and composed of equal volumes of a 5 mg/ml virus stock solution buffered with 0.1 M phosphate at pH 6.5, and the reservoir. The reservoirs were 16% ammonium sulfate buffered at pH 6.0 with 0.1 M phosphate. Crystallization was a room temperature.	分辨率 4.00 Å

共 13 个其他 PDB 条目、21 个 assembly。打开独立比较页并筛选聚集状态

查看构建体与数据证据

UniProt名称	COAT_STMV
Isoform	—
PDB实体	1
链与序列区间	作者链 A； PDB构建体 1–159； UniProt 1–159

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。链映射与序列区间收在“数据证据”中；数据库内部编号、导入时间和 assembly 操作表达式仅用于维护，因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id	1a34
沉积日期 deposition_date	1998-01-28
结构标题 title	SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX
关键词 keywords	;WATER STRUCTURE, RNA, VIRUS ASSEMBLY, MACROMOLECULAR INTERACTIONS, SATELLITE TOBACCO MOSAIC VIRUS, Icosahedral virus, Virus-RNA COMPLEX ;; Virus/RNA
实验方法 method	X-RAY DIFFRACTION

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3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	21.34 Å
回转半径 Rg (电子) rg_electron	21.02 Å
零角强度 I(0) i0	14037600.00
分子量 molecular_weight	22894.0 kDa
排除体积 excluded_volume	26411 Å³
包络体积 envelope_volume	37140 Å³
水化壳体积 shell_volume	15915 Å³
包络直径 envelope_diameter	80.5 Å
壳层 Rg shell_rg	25.99 Å
包络 Rg envelope_rg	21.91 Å
形状 Rg shape_rg	20.98 Å
总 Rg total_rg	21.79 Å
总原子数 total_atoms	2924
残基数 n_residues	167
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	80.2 Å
Rg (实空间) rg_real	21.52 Å
Rg 误差 (实空间) rg_real_error	0.87 Å
I(0) (实空间) i0_real	1.4040e+07
I(0) 误差 (实空间) i0_real_error	1.9980e+05
Rg (倒空间) rg_reciprocal	21.49 Å
I(0) (倒空间) i0_reciprocal	14040000.0000
解质量估计 total_estimate	0.7958
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	2
主峰位置 r_peak_primary	20.1 Å
偏度 Skewness skewness	0.538
峰度 Kurtosis kurtosis	-0.120
角度范围 angular_range	— – 0.3700 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	2837000.0000
实空间数据点数 n_real_points	69
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.603; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.534; Smooth: 1.000

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5. 晶体学与实验 5. Crystallography & Experiment

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6. 实体与聚合物信息 Entities & Polymers (6)

实体 1 Entity 1 polymer

描述 description	SATELLITE TOBACCO MOSAIC VIRUS
分子量 formula_weight	17533.9 kDa
来源方法 src_method	man
拷贝数 entity_count	1

聚合物 Polymer

聚合物类型 type	polypeptide(L)
链编号 strand_id	A
原子数 atom_count	3474

MGRGKVKPNRKSTGDNSNVVTMIRAGSYPKVNPTPTWVRAIPFEVSVQSGIAFKVPVGSLFSANFRTDSFTSVTVMSVRAWTQLTPPVNEYSFVRLKPLFKTGDSTEEFEGRASNINTRASVGYRIPTNLRQNTVAADNVCEVRSNCRQVALVISCCFN

来源 Source

来源生物 organism	Satellite Tobacco Mosaic Virus
NCBI 分类编号 ncbi_taxonomy_id	12881
宿主生物 host_organism	Nicotiana tabacum

实体 2 Entity 2 polymer

描述 description	;RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3') ;
分子量 formula_weight	3247.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

聚合物 Polymer

聚合物类型 type	polyribonucleotide
链编号 strand_id	B

AAAAAAAAAA

实体 3 Entity 3 polymer

描述 description	;RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3') ;
分子量 formula_weight	3016.7 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

聚合物 Polymer

聚合物类型 type	polyribonucleotide
链编号 strand_id	C

UUUUUUUUUU

实体 4 Entity 4 non-polymer

描述 description	SULFATE ION
分子量 formula_weight	96.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

实体 5 Entity 5 non-polymer

描述 description	URIDINE-5'-MONOPHOSPHATE
分子量 formula_weight	324.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

实体 6 Entity 6 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	168

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7. 折叠分类 (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

结构域编号 domain_id	d1a34a_
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
超家族 Superfamily superfamily	b.121.7 — Satellite viruses
家族 Family family	b.121.7.1 — Satellite viruses

CATH v4.4 (1 domains)

结构域编号 domain_id	1a34A00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	60 — Sandwich
拓扑 Topology topology	120 — Jelly Rolls
同源超家族 H-superfamily homologous superfamily	220 — Satellite virus coat domain

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8. 引用文献 (5)

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晶胞边长 a length_a	174.270 Å
晶胞边长 b length_b	191.770 Å
晶胞边长 c length_c	202.500 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	120

空间群 space_group	I 2 2 2
空间群编号 int_tables_number	23
晶系 crystal_system	—

分辨率 resolution	1.810 Å
最低分辨率 resolution_low	30.000 Å
R 因子 r_factor	—
R_work r_work	0.1790
R_free r_free	0.1840

fit	/app/data/saxs_computation/a3/1a34/1a34.fit
pddf	/app/data/pr_computation/a3/1a34/1a34.pr.out
profile	/app/data/saxs_computation/a3/1a34/1a34.dat

SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX

1. 蛋白身份与相关结构 Protein Identity & Related Structures

SATELLITE TOBACCO MOSAIC VIRUS

当前结构中的状态

数据库中的同蛋白其他状态

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

2. 结构基本信息 2. Structure Basics

3. SAXS 参数 (CRYSOL 理论计算) 3. SAXS Parameters (CRYSOL)

4. P(r) 距离分布 (GNOM 反演) 4. P(r) Analysis (GNOM)

5. 晶体学与实验 5. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

6. 实体与聚合物信息 Entities & Polymers (6)

实体 1 Entity 1 polymer

聚合物 Polymer

来源 Source

实体 2 Entity 2 polymer

聚合物 Polymer

实体 3 Entity 3 polymer

聚合物 Polymer

实体 4 Entity 4 non-polymer

实体 5 Entity 5 non-polymer

实体 6 Entity 6 water

7. 折叠分类 (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

CATH v4.4 (1 domains)

8. 引用文献 (5)

9. 文件与曲线 (10)

Files (7)

Curves (3)