1a5u

PYRUVATE KINASE COMPLEX WITH BIS MG-ATP-NA-OXALATE

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

PYRUVATE KINASE

物种未注明

UniProt P11974

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 4 SODIUM ION × 4 OXALATE ION × 4 MAGNESIUM ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 3 water × 4 与蛋白数一致
2 蛋白同源多聚体 同源多聚体 蛋白 4 SODIUM ION × 4 OXALATE ION × 4 MAGNESIUM ION × 7 ADENOSINE-5'-TRIPHOSPHATE × 3 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 KPYM_RABIT
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–530; UniProt 1–530 作者链 B; PDB构建体 1–530; UniProt 1–530 作者链 C; PDB构建体 1–530; UniProt 1–530 作者链 D; PDB构建体 1–530; UniProt 1–530 作者链 E; PDB构建体 1–530; UniProt 1–530 作者链 F; PDB构建体 1–530; UniProt 1–530 作者链 G; PDB构建体 1–530; UniProt 1–530 作者链 H; PDB构建体 1–530; UniProt 1–530

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1a5u
沉积日期 deposition_date1998-02-18
结构标题 titlePYRUVATE KINASE COMPLEX WITH BIS MG-ATP-NA-OXALATE
关键词 keywordsPYRUVATE KINASE, TRANSFERASE; TRANSFERASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1a5u__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1a5u__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1a5u__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)40.86 Å
Rg(电子密度)40.79 Å
总 Rg41.06 Å
原子数16040
残基数2076
排除体积286310 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1a5u__assembly_1__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
2 1 1a5u__assembly_2__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (6)

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6. 折叠分类 (SCOP + CATH) 48 domains

SCOP 2.08 (24 domains)

结构域编号 domain_idd1a5ua1
类 Class classb — All beta proteins
折叠类型 Fold foldb.58 — PK beta-barrel domain-like
超家族 Superfamily superfamilyb.58.1 — PK beta-barrel domain-like
家族 Family familyb.58.1.1 — Pyruvate kinase beta-barrel domain
结构域编号 domain_idd1a5ua2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.12 — Phosphoenolpyruvate/pyruvate domain
家族 Family familyc.1.12.1 — Pyruvate kinase
结构域编号 domain_idd1a5ua3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.1 — PK C-terminal domain-like
家族 Family familyc.49.1.1 — Pyruvate kinase, C-terminal domain
结构域编号 domain_idd1a5ub1
类 Class classb — All beta proteins
折叠类型 Fold foldb.58 — PK beta-barrel domain-like
超家族 Superfamily superfamilyb.58.1 — PK beta-barrel domain-like
家族 Family familyb.58.1.1 — Pyruvate kinase beta-barrel domain
结构域编号 domain_idd1a5ub2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.12 — Phosphoenolpyruvate/pyruvate domain
家族 Family familyc.1.12.1 — Pyruvate kinase
结构域编号 domain_idd1a5ub3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.1 — PK C-terminal domain-like
家族 Family familyc.49.1.1 — Pyruvate kinase, C-terminal domain
结构域编号 domain_idd1a5uc1
类 Class classb — All beta proteins
折叠类型 Fold foldb.58 — PK beta-barrel domain-like
超家族 Superfamily superfamilyb.58.1 — PK beta-barrel domain-like
家族 Family familyb.58.1.1 — Pyruvate kinase beta-barrel domain
结构域编号 domain_idd1a5uc2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.12 — Phosphoenolpyruvate/pyruvate domain
家族 Family familyc.1.12.1 — Pyruvate kinase
结构域编号 domain_idd1a5uc3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.1 — PK C-terminal domain-like
家族 Family familyc.49.1.1 — Pyruvate kinase, C-terminal domain
结构域编号 domain_idd1a5ud1
类 Class classb — All beta proteins
折叠类型 Fold foldb.58 — PK beta-barrel domain-like
超家族 Superfamily superfamilyb.58.1 — PK beta-barrel domain-like
家族 Family familyb.58.1.1 — Pyruvate kinase beta-barrel domain
结构域编号 domain_idd1a5ud2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.12 — Phosphoenolpyruvate/pyruvate domain
家族 Family familyc.1.12.1 — Pyruvate kinase
结构域编号 domain_idd1a5ud3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.1 — PK C-terminal domain-like
家族 Family familyc.49.1.1 — Pyruvate kinase, C-terminal domain
结构域编号 domain_idd1a5ue1
类 Class classb — All beta proteins
折叠类型 Fold foldb.58 — PK beta-barrel domain-like
超家族 Superfamily superfamilyb.58.1 — PK beta-barrel domain-like
家族 Family familyb.58.1.1 — Pyruvate kinase beta-barrel domain
结构域编号 domain_idd1a5ue2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.12 — Phosphoenolpyruvate/pyruvate domain
家族 Family familyc.1.12.1 — Pyruvate kinase
结构域编号 domain_idd1a5ue3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.1 — PK C-terminal domain-like
家族 Family familyc.49.1.1 — Pyruvate kinase, C-terminal domain
结构域编号 domain_idd1a5uf1
类 Class classb — All beta proteins
折叠类型 Fold foldb.58 — PK beta-barrel domain-like
超家族 Superfamily superfamilyb.58.1 — PK beta-barrel domain-like
家族 Family familyb.58.1.1 — Pyruvate kinase beta-barrel domain
结构域编号 domain_idd1a5uf2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.12 — Phosphoenolpyruvate/pyruvate domain
家族 Family familyc.1.12.1 — Pyruvate kinase
结构域编号 domain_idd1a5uf3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.1 — PK C-terminal domain-like
家族 Family familyc.49.1.1 — Pyruvate kinase, C-terminal domain
结构域编号 domain_idd1a5ug1
类 Class classb — All beta proteins
折叠类型 Fold foldb.58 — PK beta-barrel domain-like
超家族 Superfamily superfamilyb.58.1 — PK beta-barrel domain-like
家族 Family familyb.58.1.1 — Pyruvate kinase beta-barrel domain
结构域编号 domain_idd1a5ug2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.12 — Phosphoenolpyruvate/pyruvate domain
家族 Family familyc.1.12.1 — Pyruvate kinase
结构域编号 domain_idd1a5ug3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.1 — PK C-terminal domain-like
家族 Family familyc.49.1.1 — Pyruvate kinase, C-terminal domain
结构域编号 domain_idd1a5uh1
类 Class classb — All beta proteins
折叠类型 Fold foldb.58 — PK beta-barrel domain-like
超家族 Superfamily superfamilyb.58.1 — PK beta-barrel domain-like
家族 Family familyb.58.1.1 — Pyruvate kinase beta-barrel domain
结构域编号 domain_idd1a5uh2
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.1 — TIM beta/alpha-barrel
超家族 Superfamily superfamilyc.1.12 — Phosphoenolpyruvate/pyruvate domain
家族 Family familyc.1.12.1 — Pyruvate kinase
结构域编号 domain_idd1a5uh3
类 Class classc — Alpha and beta proteins (a/b)
折叠类型 Fold foldc.49 — Pyruvate kinase C-terminal domain-like
超家族 Superfamily superfamilyc.49.1 — PK C-terminal domain-like
家族 Family familyc.49.1.1 — Pyruvate kinase, C-terminal domain

CATH v4.4 (24 domains)

结构域编号 domain_id1a5uA01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology1380 — Pyruvate Kinase; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Pyruvate kinase, C-terminal domain
结构域编号 domain_id1a5uA02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily60 — Phosphoenolpyruvate-binding domains
结构域编号 domain_id1a5uA03
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology33 — M1 Pyruvate Kinase; Domain 3
同源超家族 H-superfamily homologous superfamily10 — PK beta-barrel domain-like
结构域编号 domain_id1a5uB01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology1380 — Pyruvate Kinase; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Pyruvate kinase, C-terminal domain
结构域编号 domain_id1a5uB02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily60 — Phosphoenolpyruvate-binding domains
结构域编号 domain_id1a5uB03
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology33 — M1 Pyruvate Kinase; Domain 3
同源超家族 H-superfamily homologous superfamily10 — PK beta-barrel domain-like
结构域编号 domain_id1a5uC01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology1380 — Pyruvate Kinase; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Pyruvate kinase, C-terminal domain
结构域编号 domain_id1a5uC02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily60 — Phosphoenolpyruvate-binding domains
结构域编号 domain_id1a5uC03
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology33 — M1 Pyruvate Kinase; Domain 3
同源超家族 H-superfamily homologous superfamily10 — PK beta-barrel domain-like
结构域编号 domain_id1a5uD01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology1380 — Pyruvate Kinase; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Pyruvate kinase, C-terminal domain
结构域编号 domain_id1a5uD02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily60 — Phosphoenolpyruvate-binding domains
结构域编号 domain_id1a5uD03
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology33 — M1 Pyruvate Kinase; Domain 3
同源超家族 H-superfamily homologous superfamily10 — PK beta-barrel domain-like
结构域编号 domain_id1a5uE01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology1380 — Pyruvate Kinase; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Pyruvate kinase, C-terminal domain
结构域编号 domain_id1a5uE02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily60 — Phosphoenolpyruvate-binding domains
结构域编号 domain_id1a5uE03
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology33 — M1 Pyruvate Kinase; Domain 3
同源超家族 H-superfamily homologous superfamily10 — PK beta-barrel domain-like
结构域编号 domain_id1a5uF01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology1380 — Pyruvate Kinase; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Pyruvate kinase, C-terminal domain
结构域编号 domain_id1a5uF02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily60 — Phosphoenolpyruvate-binding domains
结构域编号 domain_id1a5uF03
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology33 — M1 Pyruvate Kinase; Domain 3
同源超家族 H-superfamily homologous superfamily10 — PK beta-barrel domain-like
结构域编号 domain_id1a5uG01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology1380 — Pyruvate Kinase; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Pyruvate kinase, C-terminal domain
结构域编号 domain_id1a5uG02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily60 — Phosphoenolpyruvate-binding domains
结构域编号 domain_id1a5uG03
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology33 — M1 Pyruvate Kinase; Domain 3
同源超家族 H-superfamily homologous superfamily10 — PK beta-barrel domain-like
结构域编号 domain_id1a5uH01
类 Class class3 — Alpha Beta
架构 Architecture architecture40 — 3-Layer(aba) Sandwich
拓扑 Topology topology1380 — Pyruvate Kinase; Chain: A, domain 1
同源超家族 H-superfamily homologous superfamily20 — Pyruvate kinase, C-terminal domain
结构域编号 domain_id1a5uH02
类 Class class3 — Alpha Beta
架构 Architecture architecture20 — Alpha-Beta Barrel
拓扑 Topology topology20 — TIM Barrel
同源超家族 H-superfamily homologous superfamily60 — Phosphoenolpyruvate-binding domains
结构域编号 domain_id1a5uH03
类 Class class2 — Mainly Beta
架构 Architecture architecture40 — Beta Barrel
拓扑 Topology topology33 — M1 Pyruvate Kinase; Domain 3
同源超家族 H-superfamily homologous superfamily10 — PK beta-barrel domain-like
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7. 引用文献 (1)