1a9c

GTP CYCLOHYDROLASE I (C110S MUTANT) IN COMPLEX WITH GTP

Method: X-RAY DIFFRACTION Dmax: 237.0 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

GTP CYCLOHYDROLASE I

Escherichia coli

UniProt P0A6T5

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain A; UniProt 1–221 Chain B; UniProt 1–221 Chain C; UniProt 1–221 Chain D; UniProt 1–221 Chain E; UniProt 1–221 Mutation:C110S GTP GUANOSINE-5'-TRIPHOSPHATE × 10 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.90 Å R-free 0.288
2 Protein homooligomer Homooligomer Protein × 10 PDB declaration: decameric(10) Consistent with protein copy count Chain F; UniProt 1–221 Chain G; UniProt 1–221 Chain H; UniProt 1–221 Chain I; UniProt 1–221 Chain J; UniProt 1–221 Chain K; UniProt 1–221 Chain L; UniProt 1–221 Chain M; UniProt 1–221 Chain N; UniProt 1–221 Chain O; UniProt 1–221 Mutation:C110S GTP GUANOSINE-5'-TRIPHOSPHATE × 10 X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.90 Å R-free 0.288

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

6 other PDB entries and 17 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GCH1_ECOLI
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–221; UniProt 1–221 Author chain B; PDBConstruct 1–221; UniProt 1–221 Author chain C; PDBConstruct 1–221; UniProt 1–221 Author chain D; PDBConstruct 1–221; UniProt 1–221 Author chain E; PDBConstruct 1–221; UniProt 1–221 Author chain F; PDBConstruct 1–221; UniProt 1–221 Author chain G; PDBConstruct 1–221; UniProt 1–221 Author chain H; PDBConstruct 1–221; UniProt 1–221 Author chain I; PDBConstruct 1–221; UniProt 1–221 Author chain J; PDBConstruct 1–221; UniProt 1–221 Author chain K; PDBConstruct 1–221; UniProt 1–221 Author chain L; PDBConstruct 1–221; UniProt 1–221 Author chain M; PDBConstruct 1–221; UniProt 1–221 Author chain N; PDBConstruct 1–221; UniProt 1–221 Author chain O; PDBConstruct 1–221; UniProt 1–221

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1a9c

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1a9c
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1a9c
Deposition date deposition_date1998-04-04
Structure title titleGTP CYCLOHYDROLASE I (C110S MUTANT) IN COMPLEX WITH GTP
Keywords keywordsHYDROLASE, GTP, PURINE HYDROLYSIS, PTERINE SYNTHESIS, TETRAHYDROBIOPTERIN; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier80.43
Radius of gyration Rg (electron density) rg_electron81.61
Forward intensity I(0) i02106290000.00
Molecular weight molecular_weight377830.0 kDa
Excluded volume excluded_volume469990 ų
Envelope volume envelope_volume855580 ų
Hydration-shell volume shell_volume95409 ų
Envelope diameter envelope_diameter280.2
Shell Rg shell_rg65.57
Envelope Rg envelope_rg79.45
Shape Rg shape_rg81.60
Total Rg total_rg81.37
Total atoms total_atoms32535
Residues n_residues3315
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax237.0
Rg (real space) rg_real80.02
Rg uncertainty (real space) rg_real_error1.54
I(0) (real space) i0_real2.0920e+09
I(0) uncertainty (real space) i0_real_error3.9030e+07
Rg (reciprocal space) rg_reciprocal76.87
I(0) (reciprocal space) i0_reciprocal2086000000.0000
Solution quality estimate total_estimate0.8130
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary49.9
Skewness Skewness skewness0.435
Kurtosis Kurtosis kurtosis-0.692
Angular range angular_range— – 0.0950 −1
Current regularization parameter α current_alpha0.0449
Highest regularization parameter α highest_alpha44330000.0000
Real-space data points n_real_points20
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.904; Stabil: 0.991; Sysdev: 1.000; Positv: 1.000; Valcen: 0.841; Smooth: 0.009

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 45 domains

SCOP 2.08 (15 domains)

Domain ID domain_idd1a9ca_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9cb_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9cc_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9cd_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9ce_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9cf_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9cg_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9ch_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9ci_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9cj_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9ck_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9cl_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9cm_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9cn_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I
Domain ID domain_idd1a9co_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.96 — T-fold
Superfamily Superfamily superfamilyd.96.1 — Tetrahydrobiopterin biosynthesis enzymes-like
Family Family familyd.96.1.1 — GTP cyclohydrolase I

CATH v4.4 (30 domains)

Domain ID domain_id1a9cA01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cA02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cB01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cB02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cC01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cC02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cD01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cD02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cE01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cE02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cF01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cF02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cG01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cG02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cH01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cH02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cI01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cI02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cJ01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cJ02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cK01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cK02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cL01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cL02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cM01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cM02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cN01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cN02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain
Domain ID domain_id1a9cO01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology286 — GTP Cyclohydrolase I; Chain A, domain 1
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, N-terminal domain
Domain ID domain_id1a9cO02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1130 — GTP Cyclohydrolase I, domain 2
Homologous superfamily homologous superfamily10 — GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain

8. Citations (5)

9. Files and Curves (10)