1ade

STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE PH 7 AT 25 DEGREES CELSIUS

Method: X-RAY DIFFRACTION Dmax: 89.6 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

ADENYLOSUCCINATE SYNTHETASE

OrganismNot specified

UniProt P0A7D4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–431 Chain B; UniProt 1–431 Not recorded No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 2.00 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

21 other PDB entries and 23 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name PURA_ECOLI
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–431; UniProt 1–431 Author chain B; PDBConstruct 1–431; UniProt 1–431

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1ade

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1ade
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1ade
Deposition date deposition_date1995-09-14
Structure title titleSTRUCTURE OF ADENYLOSUCCINATE SYNTHETASE PH 7 AT 25 DEGREES CELSIUS
Keywords keywordsPURINE NUCLEOTIDE BIOSYNTHESIS, LIGASE, GTP-HYDROLYZING ENZYMES, LIGASE (SYNTHETASE); LIGASE (SYNTHETASE)
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier28.46
Radius of gyration Rg (electron density) rg_electron27.50
Forward intensity I(0) i0143448000.00
Molecular weight molecular_weight94408.0 kDa
Excluded volume excluded_volume118210 ų
Envelope volume envelope_volume142390 ų
Hydration-shell volume shell_volume41577 ų
Envelope diameter envelope_diameter95.7
Shell Rg shell_rg36.15
Envelope Rg envelope_rg27.51
Shape Rg shape_rg27.49
Total Rg total_rg28.34
Total atoms total_atoms8128
Residues n_residues862
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax89.6
Rg (real space) rg_real28.27
Rg uncertainty (real space) rg_real_error0.33
I(0) (real space) i0_real1.4340e+08
I(0) uncertainty (real space) i0_real_error1.6450e+06
Rg (reciprocal space) rg_reciprocal28.33
I(0) (reciprocal space) i0_reciprocal143500000.0000
Solution quality estimate total_estimate0.7222
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary35.2
Skewness Skewness skewness0.188
Kurtosis Kurtosis kurtosis-0.427
Angular range angular_range— – 0.2800 −1
Current regularization parameter α current_alpha0.0001
Highest regularization parameter α highest_alpha55960000.0000
Real-space data points n_real_points57
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.892; Stabil: 1.000; Sysdev: 0.242; Positv: 1.000; Valcen: 0.990; Smooth: 0.991

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 8 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1adea_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.10 — Nitrogenase iron protein-like
Domain ID domain_idd1adeb_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.37 — P-loop containing nucleoside triphosphate hydrolases
Superfamily Superfamily superfamilyc.37.1 — P-loop containing nucleoside triphosphate hydrolases
Family Family familyc.37.1.10 — Nitrogenase iron protein-like

CATH v4.4 (6 domains)

Domain ID domain_id1adeA01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology440 — Adenylosuccinate Synthetase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Adenylosuccinate Synthetase, subunit A, domain 1
Domain ID domain_id1adeA02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology300 — Adenylosuccinate Synthetase, subunit A; domain 2
Homologous superfamily homologous superfamily10 — Adenylosuccinate Synthetase, subunit A, domain 2
Domain ID domain_id1adeA03
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology170 — Adenylosuccinate Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily10 — Adenylosuccinate Synthetase, subunit A, domain 3
Domain ID domain_id1adeB01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology440 — Adenylosuccinate Synthetase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Adenylosuccinate Synthetase, subunit A, domain 1
Domain ID domain_id1adeB02
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology300 — Adenylosuccinate Synthetase, subunit A; domain 2
Homologous superfamily homologous superfamily10 — Adenylosuccinate Synthetase, subunit A, domain 2
Domain ID domain_id1adeB03
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology170 — Adenylosuccinate Synthetase; Chain A, domain 3
Homologous superfamily homologous superfamily10 — Adenylosuccinate Synthetase, subunit A, domain 3

8. Citations (2)

9. Files and Curves (10)