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1aok

VIPOXIN COMPLEX

Method: X-RAY DIFFRACTION D_max: 61.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1aok
deposition_date	1997-07-07
title	VIPOXIN COMPLEX
keywords	PHOSPHOLIPASE, HYDROLASE, VIPOXIN, PLA2-ACTIVITY, SNAKE-VENOM; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	18.18 Å
rg_electron	17.12 Å
i0	15786100.00
molecular_weight	27509.0 kDa
excluded_volume	33298 Å³
envelope_volume	37676 Å³
shell_volume	18171 Å³
envelope_diameter	64.8 Å
shell_rg	23.61 Å
envelope_rg	17.44 Å
shape_rg	17.09 Å
total_rg	18.07 Å
total_atoms	1913
n_residues	244
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	61.3 Å
rg_real	18.06 Å
rg_real_error	0.37 Å
i0_real	1.5790e+07
i0_real_error	1.7760e+05
rg_reciprocal	18.08 Å
i0_reciprocal	15790000.0000
total_estimate	0.7840
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	24.8 Å
skewness	0.134
kurtosis	-0.311
angular_range	— – 0.4400 Å⁻¹
current_alpha	0.0000
highest_alpha	4942000.0000
n_real_points	75
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.731; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	VIPOXIN COMPLEX
formula_weight	13661.0 kDa
ec_number	3.1.1.4
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2204

NLFQFGDMILQKTGKEAVHSYAIYGCYCGWGGQGRAQDATDRCCFAQDCCYGRVNDCNPKTATYTYSRENGDIVCGDDDLCLRAVCECDRAAAICLGENVNTYDKNYEYYSISHCTEESEQC

Entity 2 polymer

description	VIPOXIN COMPLEX
formula_weight	13835.8 kDa
ec_number	3.1.1.4
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

NLFQFAKMINGKLGAFSVWNYISYGCYCGWGGQGTPKDATDRCCFVHDCCYGRVRGCNPKLAIYYYSFKKGNIVCGKNNGCLRDICECDRVAANCFHQNKNTYNANYKFLSSSRCRQTGEKC

Entity 3 non-polymer

description	ACETATE ION
formula_weight	59.0 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	291

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6. Citations (1)

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length_a	67.640 Å
length_b	67.690 Å
length_c	46.820 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	2.000 Å
resolution_low	20.000 Å
r_factor	—
r_work	0.1600
r_free	0.2300

fit	/app/data/saxs_computation/ao/1aok/1aok.fit
pddf	/app/data/pr_computation/ao/1aok/1aok.pr.out
profile	/app/data/saxs_computation/ao/1aok/1aok.dat

VIPOXIN COMPLEX

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 non-polymer

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)