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1aol

FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN

Method: X-RAY DIFFRACTION D_max: 67.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1aol
deposition_date	1997-07-08
title	FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN
keywords	COAT PROTEIN, VIRAL GLYCOPROTEIN, RETROVIRUS, Viral protein; VIRAL PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	19.40 Å
rg_electron	18.34 Å
i0	13091900.00
molecular_weight	25947.0 kDa
excluded_volume	31873 Å³
envelope_volume	36203 Å³
shell_volume	17022 Å³
envelope_diameter	67.0 Å
shell_rg	24.14 Å
envelope_rg	18.91 Å
shape_rg	18.26 Å
total_rg	19.39 Å
total_atoms	1816
n_residues	228
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	67.4 Å
rg_real	19.39 Å
rg_real_error	0.53 Å
i0_real	1.3090e+07
i0_real_error	1.8990e+05
rg_reciprocal	19.39 Å
i0_reciprocal	13090000.0000
total_estimate	0.8595
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	22.8 Å
skewness	0.357
kurtosis	-0.263
angular_range	— – 0.4100 Å⁻¹
current_alpha	0.0000
highest_alpha	2173000.0000
n_real_points	72
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.776; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.935; Smooth: 0.907

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	GP70
formula_weight	25397.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2007

QVYNITWEVTNGDRETVWAISGNHPLWTWWPVLTPDLCMLALSGPPHWGLEYQAPYSSPPGPPCCSGSSGSSAGCSRDCDEPLTSLTPRCNTAWNRLKLDQVTHKSSEGFYVCPGSHRPREAKSCGGPDSFYCASWGCETTGRVYWKPSSSWDYITVDNNLTTSQAVQVCKDNKWCNPLAIQFTNAGKQVTSWTTGHYWGLRLYVSGRDPGLTFGIRLRYQNLGPRVP

Source

organism	Friend murine leukemia virus
ncbi_taxonomy_id	11795
host_organism	Trichoplusia ni

Entity 2 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	man
entity_count	2

Entity 3 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	3

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	191

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6. Citations (1)

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length_a	55.300 Å
length_b	68.400 Å
length_c	80.400 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.000 Å
resolution_low	20.000 Å
r_factor	0.2230
r_work	0.2230
r_free	0.2640

fit	/app/data/saxs_computation/ao/1aol/1aol.fit
pddf	/app/data/pr_computation/ao/1aol/1aol.pr.out
profile	/app/data/saxs_computation/ao/1aol/1aol.dat

FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction