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1ati

CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

Method: X-RAY DIFFRACTION D_max: 95.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ati
deposition_date	1996-04-23
title	CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
keywords	PROTEIN BIOSYNTHESIS, LIGASE, SYNTHETASE, AMINOACYL-TRNA SYNTHETASE; PROTEIN BIOSYNTHESIS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.39 Å
rg_electron	29.06 Å
i0	174110000.00
molecular_weight	104360.0 kDa
excluded_volume	130400 Å³
envelope_volume	163010 Å³
shell_volume	44969 Å³
envelope_diameter	104.4 Å
shell_rg	37.76 Å
envelope_rg	29.50 Å
shape_rg	29.07 Å
total_rg	29.82 Å
total_atoms	7384
n_residues	926
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	95.7 Å
rg_real	30.23 Å
rg_real_error	0.50 Å
i0_real	1.7410e+08
i0_real_error	2.1550e+06
rg_reciprocal	30.30 Å
i0_reciprocal	174100000.0000
total_estimate	0.8900
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	38.6 Å
skewness	0.199
kurtosis	-0.342
angular_range	— – 0.2600 Å⁻¹
current_alpha	0.0000
highest_alpha	42470000.0000
n_real_points	53
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.887; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.988; Smooth: 0.918

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	GLYCYL-TRNA SYNTHETASE
formula_weight	58164.0 kDa
ec_number	6.1.1.14
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	7407

AASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERLRW

Entity 2 polymer

description	GLYCYL-tRNA SYNTHETASE
formula_weight	3166.9 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

Entity 3 polymer

description	GLYCYL-tRNA SYNTHETASE
formula_weight	1379.7 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	D

XXXXXXXXXXXXXXXX

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	23

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6. Citations (2)

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length_a	126.900 Å
length_b	255.300 Å
length_c	105.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	2.750 Å
resolution_low	20.000 Å
r_factor	0.2270
r_work	0.2270
r_free	0.2900

fit	/app/data/saxs_computation/at/1ati/1ati.fit
pddf	/app/data/pr_computation/at/1ati/1ati.pr.out
profile	/app/data/saxs_computation/at/1ati/1ati.dat

CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)