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1atj

RECOMBINANT HORSERADISH PEROXIDASE C1A

Method: X-RAY DIFFRACTION D_max: 130.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1atj
deposition_date	1997-08-14
title	RECOMBINANT HORSERADISH PEROXIDASE C1A
keywords	PEROXIDASE, OXIDOREDUCTASE, GLYCOPROTEIN; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	40.90 Å
rg_electron	40.45 Å
i0	658307000.00
molecular_weight	206370.0 kDa
excluded_volume	256450 Å³
envelope_volume	331400 Å³
shell_volume	67903 Å³
envelope_diameter	136.1 Å
shell_rg	46.45 Å
envelope_rg	39.79 Å
shape_rg	40.44 Å
total_rg	40.77 Å
total_atoms	17640
n_residues	1836
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	130.7 Å
rg_real	40.76 Å
rg_real_error	0.83 Å
i0_real	6.5830e+08
i0_real_error	1.0260e+07
rg_reciprocal	40.90 Å
i0_reciprocal	658400000.0000
total_estimate	0.8949
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	53.6 Å
skewness	0.175
kurtosis	-0.465
angular_range	— – 0.1950 Å⁻¹
current_alpha	0.0001
highest_alpha	75390000.0000
n_real_points	40
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.914; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.888

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	PEROXIDASE C1A
formula_weight	33747.0 kDa
ec_number	1.11.1.7
src_method	man
entity_count	6

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F
atom_count	18528

QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNS

Source

organism	Armoracia rusticana
ncbi_taxonomy_id	3704
host_organism	Escherichia coli

Entity 2 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	12

Entity 3 non-polymer

description	PROTOPORPHYRIN IX CONTAINING FE
formula_weight	616.5 kDa
src_method	syn
entity_count	6

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	888

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6. Citations (2)

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length_a	159.170 Å
length_b	159.170 Å
length_c	114.270 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	36

space_group	P 31 1 2
int_tables_number	151
crystal_system	—

resolution	2.150 Å
resolution_low	100.000 Å
r_factor	0.2220
r_work	0.2220
r_free	0.2420

fit	/app/data/saxs_computation/at/1atj/1atj.fit
pddf	/app/data/pr_computation/at/1atj/1atj.pr.out
profile	/app/data/saxs_computation/at/1atj/1atj.dat

RECOMBINANT HORSERADISH PEROXIDASE C1A

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction