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1ayv

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT THIAZOLHYDRAZIDE INHIBITOR

Method: X-RAY DIFFRACTION D_max: 58.6 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ayv
deposition_date	1997-11-10
title	CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT THIAZOLHYDRAZIDE INHIBITOR
keywords	HYDROLASE, SULFHYDRYL PROTEINASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	17.49 Å
rg_electron	16.31 Å
i0	11218600.00
molecular_weight	24112.0 kDa
excluded_volume	29843 Å³
envelope_volume	33348 Å³
shell_volume	16857 Å³
envelope_diameter	57.2 Å
shell_rg	22.73 Å
envelope_rg	16.65 Å
shape_rg	16.27 Å
total_rg	17.43 Å
total_atoms	1692
n_residues	215
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	58.6 Å
rg_real	17.38 Å
rg_real_error	0.32 Å
i0_real	1.1220e+07
i0_real_error	1.2330e+05
rg_reciprocal	17.40 Å
i0_reciprocal	11220000.0000
total_estimate	0.7268
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	21.9 Å
skewness	0.184
kurtosis	-0.356
angular_range	— – 0.4550 Å⁻¹
current_alpha	0.0000
highest_alpha	2930000.0000
n_real_points	76
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.787; Stabil: 1.000; Sysdev: 0.363; Positv: 1.000; Valcen: 0.999; Smooth: 0.996

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	CATHEPSIN K
formula_weight	23523.5 kDa
ec_number	3.4.22.38
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	1759

APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Spodoptera frugiperda

Entity 2 non-polymer

description	N-[2-[1-(N-BENZYLOXYCARBONYLAMINO)-3-METHYLBUTYL]THIAZOL-4-YLCARBONYL]-N'-(BENZYLOXYCARBONYL-L-LEUCINYL)HYDRAZIDE
formula_weight	609.7 kDa
src_method	syn
entity_count	1

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	67

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6. Citations (1)

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length_a	38.310 Å
length_b	51.270 Å
length_c	103.870 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.300 Å
resolution_low	8.000 Å
r_factor	0.2090
r_work	0.2090
r_free	0.3120

fit	/app/data/saxs_computation/ay/1ayv/1ayv.fit
pddf	/app/data/pr_computation/ay/1ayv/1ayv.pr.out
profile	/app/data/saxs_computation/ay/1ayv/1ayv.dat

CRYSTAL STRUCTURE OF CYSTEINE PROTEASE HUMAN CATHEPSIN K IN COMPLEX WITH A COVALENT THIAZOLHYDRAZIDE INHIBITOR

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction