The crystal structure of phosphoglucose isomerase-an enzyme with autocrine motility factor activity in tumor cells

Method: X-RAY DIFFRACTION D_max: 79.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1b0z
deposition_date	1998-11-15
title	The crystal structure of phosphoglucose isomerase-an enzyme with autocrine motility factor activity in tumor cells
keywords	PHOSPHOGLUCOSE ISOMERASE, AUTOCRINEFACTOR, NEUROLEUKIN, CRYSTALLOGRAPHY MOTILITY, ISOMERASE; ISOMERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	24.59 Å
rg_electron	23.43 Å
i0	40308700.00
molecular_weight	49766.0 kDa
excluded_volume	62496 Å³
envelope_volume	75591 Å³
shell_volume	26877 Å³
envelope_diameter	83.1 Å
shell_rg	30.66 Å
envelope_rg	23.79 Å
shape_rg	23.41 Å
total_rg	24.33 Å
total_atoms	3514
n_residues	442
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	79.7 Å
rg_real	24.50 Å
rg_real_error	0.46 Å
i0_real	4.0310e+07
i0_real_error	4.6770e+05
rg_reciprocal	24.52 Å
i0_reciprocal	40310000.0000
total_estimate	0.8987
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	29.1 Å
skewness	0.232
kurtosis	-0.442
angular_range	— – 0.3250 Å⁻¹
current_alpha	0.0000
highest_alpha	5932000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.896; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.991

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (2)

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length_a	75.100 Å
length_b	93.730 Å
length_c	171.900 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	I 2 2 2
int_tables_number	23
crystal_system	—

resolution	2.300 Å
resolution_low	8.000 Å
r_factor	—
r_work	0.1850
r_free	0.2580

description	PROTEIN (PHOSPHOGLUCOSE ISOMERASE)
formula_weight	50202.8 kDa
ec_number	5.3.1.9
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	3698

The crystal structure of phosphoglucose isomerase-an enzyme with autocrine motility factor activity in tumor cells

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Geobacillus stearothermophilus
ncbi_taxonomy_id	1422
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	184

fit	/app/data/saxs_computation/b0/1b0z/1b0z.fit
pddf	/app/data/pr_computation/b0/1b0z/1b0z.pr.out
profile	/app/data/saxs_computation/b0/1b0z/1b0z.dat