1b25

FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE FROM PYROCOCCUS FURIOSUS

Method: X-RAY DIFFRACTION
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1. 蛋白身份与相关结构 Protein Identity & Related Structures

PROTEIN (FORMALDEHYDE FERREDOXIN OXIDOREDUCTASE)

物种未注明

UniProt O93738

当前结构中的状态

Assembly 物理组成 蛋白状态 分子拷贝数 共同组分 数据核对
1 蛋白同源多聚体 同源多聚体 蛋白 4 IRON/SULFUR CLUSTER × 4 Oxo-tungstopterin cofactor × 4 MAGNESIUM ION × 4 CALCIUM ION × 4 water × 4 与蛋白数一致

数据库中的同蛋白其他状态

查看构建体与数据证据
UniProt名称 O93738_PYRFU
Isoform —
PDB实体 1
链与序列区间 作者链 A; PDB构建体 1–619; UniProt 1–619

页面优先展示蛋白身份、当前 assembly、共同组分、聚集状态和跨 PDB 结构链接。 链映射与序列区间收在“数据证据”中;数据库内部编号、导入时间和 assembly 操作表达式仅用于维护,因此不在读者页面展示。

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2. 结构基本信息 2. Structure Basics

条目编号 entry_id1b25
沉积日期 deposition_date1998-12-04
结构标题 titleFORMALDEHYDE FERREDOXIN OXIDOREDUCTASE FROM PYROCOCCUS FURIOSUS
关键词 keywordsMOCO, TUNGSTOENZYME, TUNGSTEN CONTAINING PROTEIN, HYPERTHERMOPHILE, OXIDOREDUCTASE; OXIDOREDUCTASE
实验方法 methodX-RAY DIFFRACTION
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3. Official assembly/model 理论 SAXS Official SAXS Profiles

页面只读取最新 assembly 计算结果。每一条曲线都对应明确的 PDB、official biological assembly 和 coordinate model。

1b25__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

下载该曲线 .dat

1b25__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 个绘图点;横轴和纵轴均采用对数尺度。

1b25__assembly_1__model_1 | P(r) · Pending

新版 assembly/model P(r) 尚未计算 此处仅保留位置,不展示旧数据 r (Angstrom) P(r)
P(r) 将按相同 assembly/model 分别计算和展示。
Rg(Guinier)46.11 Å
Rg(电子密度)45.97 Å
总 Rg45.89 Å
原子数19384
残基数2444
排除体积346640 ų
最大 q0.500 Å⁻¹
Assembly Model 结构单元 聚集说明 状态 CRYSOL 操作
1 1 1b25__assembly_1__model_1 tetrameric (4) 成功 4.1.3-1-20251215 (887e7ef) 查看 下载
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合物信息 Entities & Polymers (6)

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6. 折叠分类 (SCOP + CATH) 20 domains

SCOP 2.08 (8 domains)

结构域编号 domain_idd1b25a1
类 Class classa — All alpha proteins
折叠类型 Fold folda.110 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
超家族 Superfamily superfamilya.110.1 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
家族 Family familya.110.1.1 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
结构域编号 domain_idd1b25a2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.152 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
超家族 Superfamily superfamilyd.152.1 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
家族 Family familyd.152.1.1 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
结构域编号 domain_idd1b25b1
类 Class classa — All alpha proteins
折叠类型 Fold folda.110 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
超家族 Superfamily superfamilya.110.1 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
家族 Family familya.110.1.1 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
结构域编号 domain_idd1b25b2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.152 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
超家族 Superfamily superfamilyd.152.1 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
家族 Family familyd.152.1.1 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
结构域编号 domain_idd1b25c1
类 Class classa — All alpha proteins
折叠类型 Fold folda.110 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
超家族 Superfamily superfamilya.110.1 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
家族 Family familya.110.1.1 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
结构域编号 domain_idd1b25c2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.152 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
超家族 Superfamily superfamilyd.152.1 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
家族 Family familyd.152.1.1 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
结构域编号 domain_idd1b25d1
类 Class classa — All alpha proteins
折叠类型 Fold folda.110 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
超家族 Superfamily superfamilya.110.1 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
家族 Family familya.110.1.1 — Aldehyde ferredoxin oxidoreductase, C-terminal domains
结构域编号 domain_idd1b25d2
类 Class classd — Alpha and beta proteins (a+b)
折叠类型 Fold foldd.152 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
超家族 Superfamily superfamilyd.152.1 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
家族 Family familyd.152.1.1 — Aldehyde ferredoxin oxidoreductase, N-terminal domain

CATH v4.4 (12 domains)

结构域编号 domain_id1b25A01
类 Class class3 — Alpha Beta
架构 Architecture architecture60 — 4-Layer Sandwich
拓扑 Topology topology9 — Aldehyde Ferredoxin Oxidoreductase; A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
结构域编号 domain_id1b25A02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology569 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2
同源超家族 H-superfamily homologous superfamily10 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2
结构域编号 domain_id1b25A03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology599 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3
同源超家族 H-superfamily homologous superfamily10 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3
结构域编号 domain_id1b25B01
类 Class class3 — Alpha Beta
架构 Architecture architecture60 — 4-Layer Sandwich
拓扑 Topology topology9 — Aldehyde Ferredoxin Oxidoreductase; A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
结构域编号 domain_id1b25B02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology569 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2
同源超家族 H-superfamily homologous superfamily10 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2
结构域编号 domain_id1b25B03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology599 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3
同源超家族 H-superfamily homologous superfamily10 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3
结构域编号 domain_id1b25C01
类 Class class3 — Alpha Beta
架构 Architecture architecture60 — 4-Layer Sandwich
拓扑 Topology topology9 — Aldehyde Ferredoxin Oxidoreductase; A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
结构域编号 domain_id1b25C02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology569 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2
同源超家族 H-superfamily homologous superfamily10 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2
结构域编号 domain_id1b25C03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology599 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3
同源超家族 H-superfamily homologous superfamily10 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3
结构域编号 domain_id1b25D01
类 Class class3 — Alpha Beta
架构 Architecture architecture60 — 4-Layer Sandwich
拓扑 Topology topology9 — Aldehyde Ferredoxin Oxidoreductase; A, domain 1
同源超家族 H-superfamily homologous superfamily10 — Aldehyde ferredoxin oxidoreductase, N-terminal domain
结构域编号 domain_id1b25D02
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology569 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2
同源超家族 H-superfamily homologous superfamily10 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2
结构域编号 domain_id1b25D03
类 Class class1 — Mainly Alpha
架构 Architecture architecture10 — Orthogonal Bundle
拓扑 Topology topology599 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3
同源超家族 H-superfamily homologous superfamily10 — Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3
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7. 引用文献 (2)