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1b69

THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX

Method: SOLUTION NMR D_max: 55.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1b69
deposition_date	1999-01-21
title	THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX
keywords	INTEGRASE, DNA BINDING, TRANSPOSITION, COMPLEX, BETA-SHEET RECOGNITION, INTEGRASE-DNA COMPLEX; INTEGRASE/DNA
method	SOLUTION NMR

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	16.51 Å
rg_electron	15.48 Å
i0	8196470.00
molecular_weight	16078.0 kDa
excluded_volume	17974 Å³
envelope_volume	23317 Å³
shell_volume	13042 Å³
envelope_diameter	54.7 Å
shell_rg	20.90 Å
envelope_rg	15.81 Å
shape_rg	15.40 Å
total_rg	16.47 Å
total_atoms	1991
n_residues	95
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	55.3 Å
rg_real	16.44 Å
rg_real_error	0.31 Å
i0_real	8.1960e+06
i0_real_error	9.3230e+04
rg_reciprocal	16.44 Å
i0_reciprocal	8196000.0000
total_estimate	0.8839
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	53.9 Å
skewness	0.212
kurtosis	-0.402
angular_range	— – 0.4800 Å⁻¹
current_alpha	0.0000
highest_alpha	1317000.0000
n_real_points	78
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.830; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 1.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	;DNA (5'-D(GPAPGPTPAPGPTPAPAPAPTPTP*C)-3') ;
formula_weight	4014.6 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	B
atom_count	1991

GAGTAGTAAATTC

Entity 2 polymer

description	;DNA (5'-D(GPAPAPTPTPTPAPCPTPAPCPTP*C)-3') ;
formula_weight	3925.6 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	C

GAATTTACTACTC

Entity 3 polymer

description	PROTEIN (INTEGRASE)
formula_weight	8177.3 kDa
mutation	C57A
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A

EKRRDNRGRILKTGESQRKDGRYLYKYIDSFGEPQFVYSWKLVATDRVPAGKRDAISLREKIAELQKDI

Source

organism	Enterococcus faecalis
ncbi_taxonomy_id	1351
host_organism	Escherichia coli BL21(DE3)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	1

space_group	P 1
int_tables_number	1
crystal_system	—

fit	/app/data/saxs_computation/b6/1b69/1b69.fit
pddf	/app/data/pr_computation/b6/1b69/1b69.pr.out
profile	/app/data/saxs_computation/b6/1b69/1b69.dat

THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)