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1b82

PRISTINE RECOMB. LIGNIN PEROXIDASE H8

Method: X-RAY DIFFRACTION D_max: 121.7 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1b82
deposition_date	1999-02-04
title	PRISTINE RECOMB. LIGNIN PEROXIDASE H8
keywords	LIGNIN DEGRADATION, HEME, RADICAL REACTION, ELECTRON TRANSFER, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	35.02 Å
rg_electron	35.08 Å
i0	90438100.00
molecular_weight	75497.0 kDa
excluded_volume	93804 Å³
envelope_volume	115800 Å³
shell_volume	29381 Å³
envelope_diameter	126.0 Å
shell_rg	38.55 Å
envelope_rg	34.93 Å
shape_rg	35.07 Å
total_rg	35.37 Å
total_atoms	5313
n_residues	694
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	121.7 Å
rg_real	35.46 Å
rg_real_error	1.21 Å
i0_real	9.0440e+07
i0_real_error	1.5360e+06
rg_reciprocal	35.19 Å
i0_reciprocal	90420000.0000
total_estimate	0.7321
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	27.1 Å
skewness	0.531
kurtosis	-0.598
angular_range	— – 0.2250 Å⁻¹
current_alpha	0.0000
highest_alpha	23540000.0000
n_real_points	46
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.429; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.420; Smooth: 0.806

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	PROTEIN (LIGNIN PEROXIDASE)
formula_weight	37480.7 kDa
ec_number	1.11.1.14
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	5864

AAVIEKRATCSNGKTVGDASCCAWFDVLDDIQQNLFHGGQCGAEAHESIRLVFHDSIAISPAMEAQGKFGGGGADGSIMIFDDIETAFHPNIGLDEIVKLQKPFVQKHGVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPATQPAPDGLVPEPFHTVDQIINRVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGLPFDSTPGIFDSQFFVETQLRGTAFPGSGGNQGEVESPLPGEIRIQSDHTIARDSRTACEWQSFVNNQSKLVDDFQFIFLALTQLGQDPNAMTDCSDVIPQSKPIPGNLPFSFFPAGKTIKDVEQACAETPFPTLTTLPGPETSVQRIPPPPGA

Source

organism	Phanerochaete chrysosporium
ncbi_taxonomy_id	5306
host_organism	Escherichia coli

Entity 2 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	PROTOPORPHYRIN IX CONTAINING FE
formula_weight	616.5 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	548

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6. Citations (4)

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length_a	73.260 Å
length_b	94.420 Å
length_c	228.050 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	1.800 Å
resolution_low	30.000 Å
r_factor	—
r_work	0.1630
r_free	0.1940

fit	/app/data/saxs_computation/b8/1b82/1b82.fit
pddf	/app/data/pr_computation/b8/1b82/1b82.pr.out
profile	/app/data/saxs_computation/b8/1b82/1b82.dat

PRISTINE RECOMB. LIGNIN PEROXIDASE H8

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction