CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE FROM PSEUDOMONAS SP. LB400

Method: X-RAY DIFFRACTION D_max: 67.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bdb
deposition_date	1997-05-10
title	CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE FROM PSEUDOMONAS SP. LB400
keywords	NAD-DEPENDENT OXIDOREDUCTASE, SHORT-CHAIN ALCOHOL DEHYDROGENASE, PCB DEGRADATION, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	19.92 Å
rg_electron	19.00 Å
i0	14644800.00
molecular_weight	28567.0 kDa
excluded_volume	35701 Å³
envelope_volume	42610 Å³
shell_volume	18994 Å³
envelope_diameter	70.0 Å
shell_rg	25.35 Å
envelope_rg	19.99 Å
shape_rg	19.01 Å
total_rg	19.90 Å
total_atoms	2013
n_residues	267
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	67.1 Å
rg_real	19.95 Å
rg_real_error	0.46 Å
i0_real	1.4640e+07
i0_real_error	1.8180e+05
rg_reciprocal	19.95 Å
i0_reciprocal	14640000.0000
total_estimate	0.7806
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	24.6 Å
skewness	0.462
kurtosis	0.004
angular_range	— – 0.4000 Å⁻¹
current_alpha	0.0000
highest_alpha	2778000.0000
n_real_points	72
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.729; Stabil: 0.995; Sysdev: 1.000; Positv: 1.000; Valcen: 0.973; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

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6. Citations (2)

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length_a	79.200 Å
length_b	79.200 Å
length_c	152.880 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 64 2 2
int_tables_number	181
crystal_system	—

resolution	2.000 Å
resolution_low	25.000 Å
r_factor	—
r_work	0.1790
r_free	0.2300

description	CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE
formula_weight	28929.9 kDa
src_method	nat
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	2133

CIS-BIPHENYL-2,3-DIHYDRODIOL-2,3-DEHYDROGENASE FROM PSEUDOMONAS SP. LB400

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 non-polymer

Entity 3 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)

description	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
formula_weight	663.4 kDa
src_method	syn
entity_count	1

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	120

fit	/app/data/saxs_computation/bd/1bdb/1bdb.fit
pddf	/app/data/pr_computation/bd/1bdb/1bdb.pr.out
profile	/app/data/saxs_computation/bd/1bdb/1bdb.dat