SAXSdb — 1bev

▼

1. Structure Basics

entry_id	1bev
deposition_date	1996-04-03
title	BOVINE ENTEROVIRUS VG-5-27
keywords	COAT PROTEIN, BOVINE ENTEROVIRUS VG-5-27, PICORNAVIRUS, Icosahedral virus, Virus; VIRUS
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	29.10 Å
rg_electron	28.04 Å
i0	125729000.00
molecular_weight	87770.0 kDa
excluded_volume	109310 Å³
envelope_volume	134290 Å³
shell_volume	39011 Å³
envelope_diameter	101.3 Å
shell_rg	36.20 Å
envelope_rg	28.55 Å
shape_rg	28.02 Å
total_rg	28.86 Å
total_atoms	6185
n_residues	794
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	94.6 Å
rg_real	29.04 Å
rg_real_error	0.47 Å
i0_real	1.2570e+08
i0_real_error	1.7190e+06
rg_reciprocal	29.07 Å
i0_reciprocal	125700000.0000
total_estimate	0.8925
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	35.0 Å
skewness	0.303
kurtosis	-0.344
angular_range	— – 0.2700 Å⁻¹
current_alpha	0.0001
highest_alpha	22340000.0000
n_real_points	55
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.874; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.977

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (7)

Entity 1 polymer

description	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
formula_weight	31238.9 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	1
atom_count	6315

NDPGKMLKDAIDKQAAGALVAGTSTSTHSVATDSTPALQAAETGATSTARDESMIETRTIVPTHGIHETSVESFFGRSSLVGMPLLATGTSITHWRIDFREFVQLRAKMSWFTYMRFDVEFTIIATSSTGQNVTTEQHTTYQVMYVPPGAPVPSNQDSFQWQSGCNPSVFADTDGPPAQFSVPFMSSANAYSTVYDGYARFMDTDPDRYGILPSNFLGFMYFRTLEDAAHQVRFRIYAKIKHTSCWIPRAPRQAPYKKRYNLVFSGDSDRICSNRASLTSY

Source

organism	Bovine enterovirus (STRAIN VG-5-27)
ncbi_taxonomy_id	12065
host_organism	Mesocricetus auratus

Entity 2 polymer

description	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
formula_weight	27325.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	2

SPSAEACGYSDRVAQLTLGNSTITTQEAANICVAYGCWPAKLSDTDATSVDKPTEPGVSADRFYTLRSKPWQADSKGWYWKLPDALNNTGMFGQNAQFHYLYRGGWAVHVQCNATKFHQGTLLVLAIPEHQIATQEQPAFDRTMPGSEGGTFQEPFWLEDGTSLGNSLIYPHQWINLRTNNSATLILPYVNAIPMDSAIRHSNWTLAIIPVAPLKYAAETTPLVPITVTIAPMETEYNGLRRAIASNQ

Source

organism	Bovine enterovirus (STRAIN VG-5-27)
ncbi_taxonomy_id	12065
host_organism	Mesocricetus auratus

Entity 3 polymer

description	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
formula_weight	26627.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	3

GLPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQVESILEANNREGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITCMFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRGVSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQTAILQ

Source

organism	Bovine enterovirus (STRAIN VG-5-27)
ncbi_taxonomy_id	12065
host_organism	Mesocricetus auratus

Entity 4 polymer

description	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
formula_weight	7311.9 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	4

GAQLSRNTAGSHTTQTYATGGSTINYNNINYYSHAASAAQNKQDFTQDPSKFTQPIADVIKETAVPLK

Source

organism	Bovine enterovirus (STRAIN VG-5-27)
ncbi_taxonomy_id	12065
host_organism	Mesocricetus auratus

Entity 5 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	2

Entity 6 non-polymer

description	MYRISTIC ACID
formula_weight	228.4 kDa
src_method	syn
entity_count	1

Entity 7 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	130

▶

6. Citations (4)

▶

length_a	388.200 Å
length_b	392.600 Å
length_c	360.700 Å
angle_alpha	90.00 °
angle_beta	112.70 °
angle_gamma	90.00 °
z_pdb	120

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	3.000 Å
resolution_low	25.000 Å
r_factor	0.2250
r_work	0.2250
r_free	—

fit	/app/data/saxs_computation/be/1bev/1bev.fit
pddf	/app/data/pr_computation/be/1bev/1bev.pr.out
profile	/app/data/saxs_computation/be/1bev/1bev.dat

BOVINE ENTEROVIRUS VG-5-27

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (7)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 polymer

Polymer

Source

Entity 5 non-polymer

Entity 6 non-polymer

Entity 7 water

6. Citations (4)

7. Files & Curves (10)

Files (7)

Curves (3)