SAXSdb — 1bev

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1. Protein Identity and Related Structures Protein Identity & Related Structures

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

Bovine enterovirus (STRAIN VG-5-27)

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 240	SULFATE ION × 120 MYRISTIC ACID × 60 water × 180	Consistent with protein count
2	Protein homooligomer	Homooligomer	Protein 4	SULFATE ION × 2 MYRISTIC ACID × 1 water × 3	Consistent with protein count
3	Protein homooligomer	Homooligomer	Protein 20	SULFATE ION × 10 MYRISTIC ACID × 5 water × 15	Consistent with protein count
4	Protein homooligomer	Homooligomer	Protein 24	SULFATE ION × 12 MYRISTIC ACID × 6 water × 18	Consistent with protein count
5	Protein homooligomer	Homooligomer	Protein 4	SULFATE ION × 2 MYRISTIC ACID × 1 water × 3	Consistent with protein count
6	Protein homooligomer	Homooligomer	Protein 240	SULFATE ION × 120 MYRISTIC ACID × 60 water × 180	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	POLG_BOVEV
Isoform	—
PDB entities	1, 2, 3, 4
Chains and sequence ranges	Author chain 1； PDBConstruct 1–281； UniProt 559–839 Author chain 2； PDBConstruct 1–248； UniProt 69–316 Author chain 3； PDBConstruct 1–242； UniProt 317–558 Author chain 4； PDBConstruct 1–68； UniProt 1–68

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	1bev
Deposition date deposition_date	1996-04-03
Structure title title	BOVINE ENTEROVIRUS VG-5-27
Keywords keywords	COAT PROTEIN, BOVINE ENTEROVIRUS VG-5-27, PICORNAVIRUS, Icosahedral virus, Virus; VIRUS
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

1bev__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

1bev__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

1bev__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	0.00 Å
Rg (electron density)	132.50 Å
Total Rg	132.60 Å
Atom count	371100
Residues	47640
Excluded volume	6558600 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`1bev__assembly_1__model_1`	240-MERIC （240）	Success	4.1.3-1-20251215 (887e7ef)	View Download
2	1	`1bev__assembly_2__model_1`	tetrameric （4）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3	1	`1bev__assembly_3__model_1`	eicosameric （20）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4	1	`1bev__assembly_4__model_1`	24-meric （24）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5	1	`1bev__assembly_5__model_1`	tetrameric （4）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
6	1	`1bev__assembly_6__model_1`	240-meric （240）	Excluded	—	—
	Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (7)

Entity 1 Entity 1 polymer

Description description	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
Molecular weight formula_weight	31238.9 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	1
Atom count atom_count	6315

NDPGKMLKDAIDKQAAGALVAGTSTSTHSVATDSTPALQAAETGATSTARDESMIETRTIVPTHGIHETSVESFFGRSSLVGMPLLATGTSITHWRIDFREFVQLRAKMSWFTYMRFDVEFTIIATSSTGQNVTTEQHTTYQVMYVPPGAPVPSNQDSFQWQSGCNPSVFADTDGPPAQFSVPFMSSANAYSTVYDGYARFMDTDPDRYGILPSNFLGFMYFRTLEDAAHQVRFRIYAKIKHTSCWIPRAPRQAPYKKRYNLVFSGDSDRICSNRASLTSY

Source Source

Source organism organism	Bovine enterovirus (STRAIN VG-5-27)
NCBI taxonomy ID ncbi_taxonomy_id	12065
Host organism host_organism	Mesocricetus auratus

Entity 2 Entity 2 polymer

Description description	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
Molecular weight formula_weight	27325.6 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	2

SPSAEACGYSDRVAQLTLGNSTITTQEAANICVAYGCWPAKLSDTDATSVDKPTEPGVSADRFYTLRSKPWQADSKGWYWKLPDALNNTGMFGQNAQFHYLYRGGWAVHVQCNATKFHQGTLLVLAIPEHQIATQEQPAFDRTMPGSEGGTFQEPFWLEDGTSLGNSLIYPHQWINLRTNNSATLILPYVNAIPMDSAIRHSNWTLAIIPVAPLKYAAETTPLVPITVTIAPMETEYNGLRRAIASNQ

Source Source

Source organism organism	Bovine enterovirus (STRAIN VG-5-27)
NCBI taxonomy ID ncbi_taxonomy_id	12065
Host organism host_organism	Mesocricetus auratus

Entity 3 Entity 3 polymer

Description description	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
Molecular weight formula_weight	26627.2 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	3

GLPTKPGPGSYQFMTTDEDCSPCILPDFQPTPEIFIPGKVNNLLEIAQVESILEANNREGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITCMFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIWDFGLQSSITLVIPWISASHFRGVSNDDVLNYQYYAAGHVTIWYQTNMVIPPGFPNTAGIIMMIAAQPNFSFRIQKDREDMTQTAILQ

Source Source

Source organism organism	Bovine enterovirus (STRAIN VG-5-27)
NCBI taxonomy ID ncbi_taxonomy_id	12065
Host organism host_organism	Mesocricetus auratus

Entity 4 Entity 4 polymer

Description description	BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
Molecular weight formula_weight	7311.9 kDa
Source method src_method	man
Copy count entity_count	1

Polymer Polymer

Polymer type type	polypeptide(L)
Chain IDs strand_id	4

GAQLSRNTAGSHTTQTYATGGSTINYNNINYYSHAASAAQNKQDFTQDPSKFTQPIADVIKETAVPLK

Source Source

Source organism organism	Bovine enterovirus (STRAIN VG-5-27)
NCBI taxonomy ID ncbi_taxonomy_id	12065
Host organism host_organism	Mesocricetus auratus

Entity 5 Entity 5 non-polymer

Description description	SULFATE ION
Molecular weight formula_weight	96.1 kDa
Source method src_method	syn
Copy count entity_count	2

Entity 6 Entity 6 non-polymer

Description description	MYRISTIC ACID
Molecular weight formula_weight	228.4 kDa
Source method src_method	syn
Copy count entity_count	1

Entity 7 Entity 7 water

Description description	water
Molecular weight formula_weight	18.0 kDa
Source method src_method	nat
Copy count entity_count	130

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6. Fold Classification (SCOP + CATH) 7 domains

SCOP 2.08 (3 domains)

Domain ID domain_id	d1bev.1
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Domain ID domain_id	d1bev1_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

Domain ID domain_id	d1bev3_
Class class	b — All beta proteins
Fold Fold fold	b.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamily	b.121.4 — Positive stranded ssRNA viruses
Family Family family	b.121.4.1 — Picornaviridae-like VP (VP1, VP2, VP3 and VP4)

CATH v4.4 (4 domains)

Domain ID domain_id	1bev100
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	1bev200
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	1bev300
Class class	2 — Mainly Beta
Architecture architecture	60 — Sandwich
Topology topology	120 — Jelly Rolls
Homologous superfamily homologous superfamily	20 —

Domain ID domain_id	1bev400
Class class	4 — Few Secondary Structures
Architecture architecture	10 — Irregular
Topology topology	80 — Rhinovirus 14, subunit 4
Homologous superfamily homologous superfamily	10 — Picornavirus coat protein VP4

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Unit-cell length a length_a	388.200 Å
Unit-cell length b length_b	392.600 Å
Unit-cell length c length_c	360.700 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	112.70 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	120

Space group space_group	P 1 21 1
Space-group number int_tables_number	4
Crystal system crystal_system	—

Resolution resolution	3.000 Å
Low-resolution limit resolution_low	25.000 Å
R factor r_factor	0.2250
R_work r_work	0.2250
R_free r_free	—

BOVINE ENTEROVIRUS VG-5-27

1. Protein Identity and Related Structures Protein Identity & Related Structures

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1bev__assembly_1__model_1

1bev__assembly_1__model_1 | I(q)

1bev__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

5. Entities and Polymers Entities & Polymers (7)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

Entity 3 Entity 3 polymer

Polymer Polymer

Source Source

Entity 4 Entity 4 polymer

Polymer Polymer

Source Source

Entity 5 Entity 5 non-polymer

Entity 6 Entity 6 non-polymer

Entity 7 Entity 7 water

6. Fold Classification (SCOP + CATH) 7 domains

SCOP 2.08 (3 domains)

CATH v4.4 (4 domains)

7. Citations (4)

BOVINE ENTEROVIRUS VG-5-27

1. Protein Identity and Related Structures Protein Identity & Related Structures

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

1bev__assembly_1__model_1

1bev__assembly_1__model_1 | I(q)

1bev__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

5. Entities and Polymers Entities & Polymers (7)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

Entity 2 Entity 2 polymer

Polymer Polymer

Source Source

Entity 3 Entity 3 polymer

Polymer Polymer

Source Source

Entity 4 Entity 4 polymer

Polymer Polymer

Source Source

Entity 5 Entity 5 non-polymer

Entity 6 Entity 6 non-polymer

Entity 7 Entity 7 water

6. Fold Classification (SCOP + CATH) 7 domains

SCOP 2.08 (3 domains)

CATH v4.4 (4 domains)

7. Citations (4)