CRYSTAL STRUCTURE OF APO-GLYCINE N-METHYLTRANSFERASE (GNMT)

Method: X-RAY DIFFRACTION D_max: 89.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bhj
deposition_date	1998-06-09
title	CRYSTAL STRUCTURE OF APO-GLYCINE N-METHYLTRANSFERASE (GNMT)
keywords	METHYLTRANSFERASE, FOLATE BINDING PROTEIN; METHYLTRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	27.61 Å
rg_electron	26.72 Å
i0	69832000.00
molecular_weight	64836.0 kDa
excluded_volume	81027 Å³
envelope_volume	100380 Å³
shell_volume	31378 Å³
envelope_diameter	92.7 Å
shell_rg	33.89 Å
envelope_rg	26.56 Å
shape_rg	26.71 Å
total_rg	27.53 Å
total_atoms	4570
n_residues	584
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	89.7 Å
rg_real	27.58 Å
rg_real_error	0.44 Å
i0_real	6.9830e+07
i0_real_error	1.0260e+06
rg_reciprocal	27.59 Å
i0_reciprocal	69830000.0000
total_estimate	0.8978
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	29.9 Å
skewness	0.308
kurtosis	-0.470
angular_range	— – 0.2850 Å⁻¹
current_alpha	0.0001
highest_alpha	18550000.0000
n_real_points	58
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.892; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.996; Smooth: 0.995

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	85.390 Å
length_b	174.210 Å
length_c	44.710 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	2.500 Å
resolution_low	8.000 Å
r_factor	0.2210
r_work	0.2210
r_free	0.3180

description	GLYCINE N-METHYLTRANSFERASE
formula_weight	32460.8 kDa
ec_number	2.1.1.20
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	4675

CRYSTAL STRUCTURE OF APO-GLYCINE N-METHYLTRANSFERASE (GNMT)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Rattus norvegicus
common_name	Norway rat
ncbi_taxonomy_id	10116
host_organism	Escherichia coli BL21(DE3)

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	105

fit	/app/data/saxs_computation/bh/1bhj/1bhj.fit
pddf	/app/data/pr_computation/bh/1bhj/1bhj.pr.out
profile	/app/data/saxs_computation/bh/1bhj/1bhj.dat