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1bi9

RETINAL DEHYDROGENASE TYPE TWO WITH NAD BOUND

Method: X-RAY DIFFRACTION D_max: 114.3 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bi9
deposition_date	1998-06-23
title	RETINAL DEHYDROGENASE TYPE TWO WITH NAD BOUND
keywords	ALDEHYDE DEHYDROGENASE, RETINOID; ALDEHYDE DEHYDROGENASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	37.80 Å
rg_electron	36.99 Å
i0	666188000.00
molecular_weight	212400.0 kDa
excluded_volume	266490 Å³
envelope_volume	335220 Å³
shell_volume	71778 Å³
envelope_diameter	118.8 Å
shell_rg	45.83 Å
envelope_rg	36.65 Å
shape_rg	36.97 Å
total_rg	37.57 Å
total_atoms	14932
n_residues	1917
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	114.3 Å
rg_real	37.48 Å
rg_real_error	0.49 Å
i0_real	6.6620e+08
i0_real_error	9.0580e+06
rg_reciprocal	37.68 Å
i0_reciprocal	666300000.0000
total_estimate	0.9014
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	49.0 Å
skewness	0.032
kurtosis	-0.597
angular_range	— – 0.2100 Å⁻¹
current_alpha	0.0000
highest_alpha	74830000.0000
n_real_points	43
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.932; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.966; Smooth: 0.952

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	RETINAL DEHYDROGENASE TYPE II
formula_weight	54796.5 kDa
ec_number	1.2.1.-
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	15156

MASLQLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKNS

Source

organism	Rattus norvegicus
common_name	Norway rat
ncbi_taxonomy_id	10116
host_organism	Escherichia coli

Entity 2 non-polymer

description	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
formula_weight	663.4 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	CHLORIDE ION
formula_weight	35.5 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	224

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6. Citations (4)

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length_a	149.800 Å
length_b	167.300 Å
length_c	107.500 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	2.700 Å
resolution_low	30.000 Å
r_factor	0.2340
r_work	0.2340
r_free	0.2890

fit	/app/data/saxs_computation/bi/1bi9/1bi9.fit
pddf	/app/data/pr_computation/bi/1bi9/1bi9.pr.out
profile	/app/data/saxs_computation/bi/1bi9/1bi9.dat

RETINAL DEHYDROGENASE TYPE TWO WITH NAD BOUND

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction