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1bkj

NADPH:FMN OXIDOREDUCTASE FROM VIBRIO HARVEYI

Method: X-RAY DIFFRACTION D_max: 65.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bkj
deposition_date	1998-07-08
title	NADPH:FMN OXIDOREDUCTASE FROM VIBRIO HARVEYI
keywords	OXIDOREDUCTASE, LUMINESCENCE, NADP, FLAVOPROTEIN; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.84 Å
rg_electron	20.58 Å
i0	41904600.00
molecular_weight	49213.0 kDa
excluded_volume	61147 Å³
envelope_volume	69554 Å³
shell_volume	26958 Å³
envelope_diameter	68.3 Å
shell_rg	28.40 Å
envelope_rg	20.74 Å
shape_rg	20.61 Å
total_rg	21.35 Å
total_atoms	3457
n_residues	460
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	65.8 Å
rg_real	21.63 Å
rg_real_error	0.23 Å
i0_real	4.1900e+07
i0_real_error	4.7910e+05
rg_reciprocal	21.67 Å
i0_reciprocal	41910000.0000
total_estimate	0.8996
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	63.8 Å
skewness	0.049
kurtosis	-0.501
angular_range	— – 0.3650 Å⁻¹
current_alpha	0.0000
highest_alpha	16080000.0000
n_real_points	68
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.907; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.974; Smooth: 0.995

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	NADPH-FLAVIN OXIDOREDUCTASE
formula_weight	26333.6 kDa
ec_number	1.6.99.-
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	3564

MNNTIETILAHRSIRKFTAVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAGNQAYVESAAEFLVFCIDYQRHATINPDVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPENSAVLFGMCLGHPDQNPEVKPRLPAHVVVHENQYQELNLDDIQSYDQTMQAYYASRTSNQKLSTWSQEVTGKLAGESRPHILPYLNSKGLAKR

Source

organism	Vibrio harveyi
ncbi_taxonomy_id	669
host_organism	Escherichia coli

Entity 2 non-polymer

description	PHOSPHATE ION
formula_weight	95.0 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	FLAVIN MONONUCLEOTIDE
formula_weight	456.3 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	107

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6. Citations (2)

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length_a	51.200 Å
length_b	85.900 Å
length_c	58.100 Å
angle_alpha	90.00 °
angle_beta	109.30 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	1.800 Å
resolution_low	28.000 Å
r_factor	0.1750
r_work	0.1750
r_free	0.2070

fit	/app/data/saxs_computation/bk/1bkj/1bkj.fit
pddf	/app/data/pr_computation/bk/1bkj/1bkj.pr.out
profile	/app/data/saxs_computation/bk/1bkj/1bkj.dat

NADPH:FMN OXIDOREDUCTASE FROM VIBRIO HARVEYI

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction