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1bnd

STRUCTURE OF THE BRAIN-DERIVED NEUROTROPHIC FACTOR(SLASH)NEUROTROPHIN 3 HETERODIMER

Method: X-RAY DIFFRACTION D_max: 68.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bnd
deposition_date	1994-12-12
title	STRUCTURE OF THE BRAIN-DERIVED NEUROTROPHIC FACTOR(SLASH)NEUROTROPHIN 3 HETERODIMER
keywords	NEUROTROPHIN, COMPLEX (GROWTH FACTOR-GROWTH FACTOR) COMPLEX; COMPLEX (GROWTH FACTOR/GROWTH FACTOR)
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	20.38 Å
rg_electron	19.67 Å
i0	11794500.00
molecular_weight	24713.0 kDa
excluded_volume	30616 Å³
envelope_volume	37966 Å³
shell_volume	16862 Å³
envelope_diameter	68.3 Å
shell_rg	25.26 Å
envelope_rg	20.00 Å
shape_rg	19.65 Å
total_rg	20.56 Å
total_atoms	1727
n_residues	217
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	68.5 Å
rg_real	20.42 Å
rg_real_error	0.63 Å
i0_real	1.1790e+07
i0_real_error	1.6710e+05
rg_reciprocal	20.41 Å
i0_reciprocal	11790000.0000
total_estimate	0.8051
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	22.5 Å
skewness	0.388
kurtosis	-0.341
angular_range	— – 0.3900 Å⁻¹
current_alpha	0.0000
highest_alpha	1523000.0000
n_real_points	71
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.835; Stabil: 0.997; Sysdev: 1.000; Positv: 1.000; Valcen: 0.966; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	BRAIN DERIVED NEUROTROPHIC FACTOR
formula_weight	13534.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	1937

HSDPARRGQLSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 polymer

description	NEUROTROPHIN 3
formula_weight	13656.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

YAEHKSHRGEVSVCDSESLWVTDKSSAIDIRGHQVTVLGEIKTQNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 3 non-polymer

description	ISOPROPYL ALCOHOL
formula_weight	60.1 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	70

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6. Citations (2)

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length_a	98.400 Å
length_b	45.100 Å
length_c	68.000 Å
angle_alpha	90.00 °
angle_beta	118.30 °
angle_gamma	90.00 °
z_pdb	4

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	2.300 Å
resolution_low	20.000 Å
r_factor	0.1820
r_work	0.1820
r_free	—

fit	/app/data/saxs_computation/bn/1bnd/1bnd.fit
pddf	/app/data/pr_computation/bn/1bnd/1bnd.pr.out
profile	/app/data/saxs_computation/bn/1bnd/1bnd.dat

STRUCTURE OF THE BRAIN-DERIVED NEUROTROPHIC FACTOR(SLASH)NEUROTROPHIN 3 HETERODIMER

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)