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1bs2

YEAST ARGINYL-TRNA SYNTHETASE

Method: X-RAY DIFFRACTION D_max: 97.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bs2
deposition_date	1998-08-31
title	YEAST ARGINYL-TRNA SYNTHETASE
keywords	LIGASE, AMINOACYL-TRNA SYNTHETASE, PROTEIN BIOSYNTHESIS; LIGASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.09 Å
rg_electron	28.38 Å
i0	73730600.00
molecular_weight	69305.0 kDa
excluded_volume	87568 Å³
envelope_volume	107650 Å³
shell_volume	32103 Å³
envelope_diameter	102.9 Å
shell_rg	35.27 Å
envelope_rg	28.70 Å
shape_rg	28.37 Å
total_rg	29.11 Å
total_atoms	4886
n_residues	603
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	97.5 Å
rg_real	29.14 Å
rg_real_error	0.72 Å
i0_real	7.3730e+07
i0_real_error	1.1270e+06
rg_reciprocal	29.12 Å
i0_reciprocal	73730000.0000
total_estimate	0.8823
solution_quality	GOOD a GOOD solution
n_peaks	0
r_peak_primary	— Å
skewness	0.395
kurtosis	-0.347
angular_range	— – 0.2750 Å⁻¹
current_alpha	0.0000
highest_alpha	25650000.0000
n_real_points	56
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.861; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.925; Smooth: 0.957

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	PROTEIN (ARGINYL-TRNA SYNTHETASE)
formula_weight	69617.9 kDa
ec_number	6.1.1.19
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	5157

MASTANMISQLKKLSIAEPAVAKDSHPDVNIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPRLRIKGANPKDLAVQWAEKFPCGDFLEKVEANGPFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQGMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVERM

Source

organism	Saccharomyces cerevisiae
common_name	;baker's yeast ;
ncbi_taxonomy_id	4932
host_organism	Escherichia coli

Entity 2 non-polymer

description	ARGININE
formula_weight	175.2 kDa
src_method	syn
entity_count	1

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	271

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6. Citations (1)

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length_a	100.374 Å
length_b	100.374 Å
length_c	204.341 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.750 Å
resolution_low	20.000 Å
r_factor	0.2070
r_work	0.2070
r_free	0.2690

fit	/app/data/saxs_computation/bs/1bs2/1bs2.fit
pddf	/app/data/pr_computation/bs/1bs2/1bs2.pr.out
profile	/app/data/saxs_computation/bs/1bs2/1bs2.dat

YEAST ARGINYL-TRNA SYNTHETASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction