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1bu8

RAT PANCREATIC LIPASE RELATED PROTEIN 2

Method: X-RAY DIFFRACTION D_max: 89.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bu8
deposition_date	1998-09-14
title	RAT PANCREATIC LIPASE RELATED PROTEIN 2
keywords	HYDROLASE, LIPID DEGRADATION, PANCREATIC LIPASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.32 Å
rg_electron	25.05 Å
i0	42642800.00
molecular_weight	50165.0 kDa
excluded_volume	62470 Å³
envelope_volume	72613 Å³
shell_volume	25447 Å³
envelope_diameter	93.1 Å
shell_rg	30.72 Å
envelope_rg	25.52 Å
shape_rg	25.02 Å
total_rg	25.75 Å
total_atoms	3532
n_residues	446
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	89.0 Å
rg_real	25.49 Å
rg_real_error	0.67 Å
i0_real	4.2640e+07
i0_real_error	5.7850e+05
rg_reciprocal	25.43 Å
i0_reciprocal	42640000.0000
total_estimate	0.8291
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	26.8 Å
skewness	0.594
kurtosis	-0.062
angular_range	— – 0.3150 Å⁻¹
current_alpha	0.0000
highest_alpha	11050000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.674; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.774; Smooth: 0.979

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	PROTEIN (PANCREATIC LIPASE RELATED PROTEIN 2)
formula_weight	50920.4 kDa
ec_number	3.1.1.3
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3827

KEVCYGHLGCFSNDKPWAGMLQRPLKIFPWSPEDIDTRFLLYTNENPNNYQKISATEPDTIKFSNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDINGIWEGTQNFVACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPKMGHYADQFEGKTATVEQTVYLNTGDSGNFTRWRYKVSVTLSGAKKLSGYILVALYGNNGNSKQYEIFKGSLKPEARHVRDIDVDINVGEIQKVKFLWNNKVINLFRPTLGASQITVQSGVDGKEYNFCSSDTVREDVLQSLYPC

Source

organism	Rattus norvegicus
common_name	Norway rat
ncbi_taxonomy_id	10116
host_organism	Spodoptera frugiperda

Entity 2 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	man
entity_count	1

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	295

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6. Citations (1)

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length_a	57.393 Å
length_b	79.133 Å
length_c	60.940 Å
angle_alpha	90.00 °
angle_beta	102.07 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	1.800 Å
resolution_low	10.000 Å
r_factor	0.2020
r_work	0.2020
r_free	0.2440

fit	/app/data/saxs_computation/bu/1bu8/1bu8.fit
pddf	/app/data/pr_computation/bu/1bu8/1bu8.pr.out
profile	/app/data/saxs_computation/bu/1bu8/1bu8.dat

RAT PANCREATIC LIPASE RELATED PROTEIN 2

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction