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1bwv

;Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate ;

Method: X-RAY DIFFRACTION D_max: 133.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bwv
deposition_date	1998-09-29
title	;Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate ;
keywords	CARBON DIOXIDE FIXATION, COMPLEX (RUBISCO-REACTION INTERMEDIATE), HIGH SPECIFICITY FACTOR, LYASE; LYASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	43.66 Å
rg_electron	43.32 Å
i0	1088030000.00
molecular_weight	276790.0 kDa
excluded_volume	347670 Å³
envelope_volume	451770 Å³
shell_volume	82066 Å³
envelope_diameter	133.6 Å
shell_rg	51.60 Å
envelope_rg	43.56 Å
shape_rg	43.35 Å
total_rg	43.53 Å
total_atoms	19496
n_residues	2436
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	133.3 Å
rg_real	43.44 Å
rg_real_error	0.84 Å
i0_real	1.0880e+09
i0_real_error	1.7940e+07
rg_reciprocal	43.66 Å
i0_reciprocal	1088000000.0000
total_estimate	0.8835
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	59.2 Å
skewness	0.109
kurtosis	-0.568
angular_range	— – 0.1800 Å⁻¹
current_alpha	0.0000
highest_alpha	259000000.0000
n_real_points	37
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.955; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.984; Smooth: 0.632

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE)
formula_weight	55101.8 kDa
ec_number	4.1.1.39
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,C,E,G
atom_count	20038

MSQSIEEKSVQERTRIKNSRYESGVIPYAKMGYWNPDYQVKDTDVLALFRVTPQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAADLYRAKAYKVDQVPNNPEQYFAYIAYELDLFEEGSIANLTASIIGNVFGFKAVKALRLEDMRLPLAYLKTFQGPATGVILERERLDKFGRPLLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVKDDENINSQPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVIGYTAIQTMAKWARDNDMILHLHRAGNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPIITRGFYKTLLLPKLERNLQEGLFFDMEWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQAGATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTDTSDFVETPTANI

Entity 2 polymer

description	PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE)
formula_weight	16179.4 kDa
ec_number	4.1.1.39
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	S,U,W,Y

VRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY

Entity 3 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	4

Entity 4 non-polymer

description	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
formula_weight	356.1 kDa
src_method	syn
entity_count	4

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	542

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6. Citations (2)

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length_a	117.070 Å
length_b	117.070 Å
length_c	319.630 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	24

space_group	P 64
int_tables_number	172
crystal_system	—

resolution	2.400 Å
resolution_low	20.000 Å
r_factor	0.1630
r_work	0.1630
r_free	0.1970

fit	/app/data/saxs_computation/bw/1bwv/1bwv.fit
pddf	/app/data/pr_computation/bw/1bwv/1bwv.pr.out
profile	/app/data/saxs_computation/bw/1bwv/1bwv.dat

;Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)