CRYSTAL STRUCTURE OF AN HDAC HOMOLOG FROM AQUIFEX AEOLICUS

Method: X-RAY DIFFRACTION D_max: 62.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1c3p
deposition_date	1999-07-28
title	CRYSTAL STRUCTURE OF AN HDAC HOMOLOG FROM AQUIFEX AEOLICUS
keywords	ALPHA/BETA FOLD, LYASE; LYASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	20.77 Å
rg_electron	19.55 Å
i0	28095800.00
molecular_weight	42229.0 kDa
excluded_volume	53425 Å³
envelope_volume	59259 Å³
shell_volume	24250 Å³
envelope_diameter	66.0 Å
shell_rg	27.15 Å
envelope_rg	19.94 Å
shape_rg	19.50 Å
total_rg	20.69 Å
total_atoms	2985
n_residues	372
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	62.8 Å
rg_real	20.62 Å
rg_real_error	0.34 Å
i0_real	2.8100e+07
i0_real_error	3.4450e+05
rg_reciprocal	20.65 Å
i0_reciprocal	28100000.0000
total_estimate	0.8275
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	26.4 Å
skewness	0.095
kurtosis	-0.503
angular_range	— – 0.3850 Å⁻¹
current_alpha	0.0000
highest_alpha	7577000.0000
n_real_points	70
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.927; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.000

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

▶

6. Citations (1)

▶

length_a	51.400 Å
length_b	93.800 Å
length_c	78.700 Å
angle_alpha	90.00 °
angle_beta	96.90 °
angle_gamma	90.00 °
z_pdb	4

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	1.800 Å
resolution_low	20.000 Å
r_factor	0.1980
r_work	0.1980
r_free	0.2400

description	PROTEIN (HDLP (HISTONE DEACETYLASE-LIKE PROTEIN))
formula_weight	42733.8 kDa
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	3213

CRYSTAL STRUCTURE OF AN HDAC HOMOLOG FROM AQUIFEX AEOLICUS

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Aquifex aeolicus
ncbi_taxonomy_id	63363
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	228

fit	/app/data/saxs_computation/c3/1c3p/1c3p.fit
pddf	/app/data/pr_computation/c3/1c3p/1c3p.pr.out
profile	/app/data/saxs_computation/c3/1c3p/1c3p.dat